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||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial ||Allison Stevens || ||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|online practice]]]] ||tutorial ||Allison Stevens ||
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||8:15 - 9:00 ||Quality Checking a Recon ||demo ||Allison Stevens || ||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk ||Mert Sabuncu ||
||10:00 - 10:30 ||QDEC demonstration ||demo ||Nick Schmansky ||
||10:30 - 10:45 ||'''break''' || || ||
||10:45 - 11:45 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||10:45 - 11:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||11:45 - 12:45 ||'''Lunch''' ||-- ||-- ||
||''12:15 - 12:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||12:45 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||
||1:45 - 2:15 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
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||12:45 - 1:45 ||'''Lunch''' ||-- ||-- ||
||''1:15 - 1:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||1:45 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve ||
||2:45 - 3:15 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:15 - 3:30 ||'''break''' || || ||
||3:30 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk ||Mert Sabuncu ||
||4:30 - 5:00 ||QDEC demonstration ||demo ||Nick Schmansky ||
||5:00 - 6:00 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||5:00 - 6:00 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||8:15 - 9:00 ||Quality Checking a Recon ||demo ||Allison Stevens ||

FreeSurfer Course, April 4 - 6, 2011

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, April 4th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting

Time

Title

Type

Lecturer

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users online practice]]

tutorial

Allison Stevens

8:30 - 9:00

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Bruce Fischl

9:30 - 10:30

Analyzing the Individual Subject

talk

Doug Greve

10:30 - 10:45

break

10:45 - 11:15

Tkmedit/Tksurfer demonstration

demo

Doug Greve

11:15 - 11:45

Interaction with Individual Subject Data Tutorial

tutorial

staff

11:45- 12:15

Failure Modes

talk

Bruce Fischl

12:15 - 1:15

Lunch

--

--

12:45 - 1:15

Optional Lunch Talk- A Non-physicist's Intro to MR

talk

Dylan Tisdall

1:15 - 2:15

Troubleshooting Demonstration, Troubleshooting Tutorial

tutorial

staff, Allison

2:15 - 2:45

Surface-based Smoothing/Surface-based Registration

talk

Doug Greve

2:45 - 3:15

FreeSurfer Applications

talk

David Salat

3:15 - 3:30

break

3:30 - 4:15

Registration Methods

talk

Lilla Zollei

4:15 - 4:45

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

4:45 - 5:30

Longitudinal Tutorial

tutorial

staff

5:30 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

staff

5:30 -

optional - Start Processing Your Own Data

one-on-one

staff

Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion

Time

Title

Type

Lecturer

9:00 - 10:00

Group Analysis / GLM / Multiple Comparisons

talk

Mert Sabuncu

10:00 - 10:30

QDEC demonstration

demo

Nick Schmansky

10:30 - 10:45

break

10:45 - 11:45

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

10:45 - 11:45

Group Analysis - qdec Tutorial

tutorial

staff

11:45 - 12:45

Lunch

--

--

12:15 - 12:45

Optional Lunch Talk- MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

12:45 - 1:45

ROI Analysis

talk

Doug Greve

1:45 - 2:15

ROI Analysis Tutorial

tutorial

staff

9:00 - 11:00

Diffusion Data Processing

talk

Lilla Zollei

11:00 - 11:15

break

11:15 - 11:45

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

11:45 - 12:45

Diffusion Processing Tutorial

tutorial

staff

8:15 - 9:00

Quality Checking a Recon

demo

Allison Stevens

Wednesday, April 6th - Multi-Modal / Future Directions / fMRI / Q&A

8:30 - 9:45

FSFAST

talk

Doug Greve

9:45 - 10:00

break

10:00 - 11:00

FSFAST

talk

Doug Greve

11:00 - 12:00

FSFAST

tutorial

staff

12:00 - 1:00

Lunch

--

--

12:40 - 1:00

Optional Lunch Talk- Motion-compensated neuroanatomical imaging

talk

Dylan Tisdall

1:00 - 1:30

Accuracy, Reliability and Validation

talk

David Salat

1:30 - 1:50

Future Directions: Inferring architectonic boundaries from in-vivo MRI

talk

Bruce Fischl

1:50 - 2:15

break & Evaluation

2:15 - 3:30

Multi-Modal Integration

talk

Doug Greve

3:30 - 4:30

Multi-Modal Integration Tutorial

tutorial

staff

4:30 - 5:00

Question and Answer Session, FsQuiz

talk

staff

FsTutorial/April2011CourseSchedule (last edited 2011-04-06 12:35:21 by AllisonStevens)