Differences between revisions 36 and 37
Deletions are marked like this. Additions are marked like this.
Line 14: Line 14:
||11:45- 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes]] ||talk ||Bruce Fischl || ||11:45- 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl ||
Line 16: Line 16:
||''12:45 - 1:15'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR]] '' ||''talk'' ||''Dylan Tisdall'' || ||''12:45 - 1:15'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR|&do=get]] '' ||''talk'' ||''Dylan Tisdall'' ||
Line 18: Line 18:
||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration]] ||talk ||Doug Greve ||
||2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.2011.ppt|FreeSurfer Applications]] ||talk || David Salat || 		||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] ||talk ||Doug Greve ||
||2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.2011.ppt|FreeSurfer Applications|&do=get]] ||talk || David Salat ||
Line 21: Line 21:
||3:30 - 4:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] || talk || Lilla Zollei ||
||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter || 		||3:30 - 4:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||
||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
Line 25: Line 25:
||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data]] ||one-on-one || staff || ||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff ||
Line 40: Line 40:
||''12:15 - 12:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||12:45 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve || 		||''12:15 - 12:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||12:45 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||
Line 43: Line 43:
||2:15 - 3:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Anastasia Yendiki || ||2:15 - 3:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing|&do=get]] ||talk ||Anastasia Yendiki ||
Line 46: Line 46:
||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki || ||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||
Line 51: Line 51:
||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fmri.april2011.pdf|Basics of fMRI Analysis]] ||talk ||Doug Greve || ||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fmri.april2011.pdf|Basics of fMRI Analysis|&do=get]] ||talk ||Doug Greve ||
Line 53: Line 53:
||10:15 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.pdf|FSFAST]] ||talk ||Doug Greve || ||10:15 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.pdf|FSFAST|&do=get]] ||talk ||Doug Greve ||
Line 56: Line 56:
||''1:00 - 1:30'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/motion_correction.pdf|Motion-compensated neuroanatomical imaging]]'' ||''talk'' ||''Dylan Tisdall'' ||
||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation]] ||talk ||David Salat ||
||2:00 - 2:20 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI]] ||talk ||Bruce Fischl || 		||''1:00 - 1:30'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/motion_correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' ||
||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] ||talk ||David Salat ||
||2:00 - 2:20 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|&do=get|Inferring architectonic boundaries from in-vivo MRI]] ||talk ||Bruce Fischl ||
Line 60: Line 60:
||2:45 - 3:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration]] ||talk ||Doug Greve || ||2:45 - 3:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve ||

FreeSurfer Course, April 4 - 6, 2011

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, April 4th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting

Time

Title

Type

Lecturer

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users online practice

tutorial

Allison Stevens

8:30 - 9:00

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Bruce Fischl

9:30 - 10:30

Analyzing the Individual Subject

talk

Doug Greve

10:30 - 10:45

break

10:45 - 11:15

Tkmedit/Tksurfer demonstration

demo

Doug Greve

11:15 - 11:45

Interaction with Individual Subject Data Tutorial

tutorial

staff

11:45- 12:15

Failure Modes

talk

Bruce Fischl

12:15 - 1:15

Lunch (Suggestions)

--

--

12:45 - 1:15

Optional Lunch Talk- A Non-physicist's Intro to MR

talk

Dylan Tisdall

1:15 - 2:15

Troubleshooting Demonstration, Troubleshooting Tutorial

tutorial

staff, Allison

2:15 - 2:45

Surface-based Smoothing/Surface-based Registration

talk

Doug Greve

2:45 - 3:15

FreeSurfer Applications

talk

David Salat

3:15 - 3:30

break

3:30 - 4:15

Registration Methods

talk

Lilla Zollei

4:15 - 4:45

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

4:45 - 5:30

Longitudinal Tutorial

tutorial

staff

5:30 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

staff

5:30 -

optional - Start Processing Your Own Data

one-on-one

staff

Boston Beer Works location information here and here.
Meet us at 6:25pm at the front of Building 149 (the entrance on the opposite side of the building from where the Course is held).
If you miss us, we are taking the 6:30pm MGH/Navy Yard shuttle to North Station (the next one departs at 6:45pm). From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion

Time

Title

Type

Lecturer

9:00 - 10:00

Group Analysis / GLM / Multiple Comparisons

talk

Mert Sabuncu

10:00 - 10:30

QDEC demonstration

demo

Nick Schmansky

10:30 - 10:45

break

10:45 - 11:45

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

10:45 - 11:45

Group Analysis - qdec Tutorial

tutorial

staff

11:45 - 12:45

Lunch

--

--

12:15 - 12:45

Optional Lunch Talk- MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

12:45 - 1:45

ROI Analysis

talk

Doug Greve

1:45 - 2:15

ROI Analysis Tutorial

tutorial

staff

2:15 - 3:15

Diffusion Data Processing

talk

Anastasia Yendiki

3:15 - 3:30

break

3:30 - 4:15

Diffusion Processing Tutorial

tutorial

staff

4:15 - 4:45

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

4:45 - 5:30

Tracula Tutorial

tutorial

staff

5:30 - 6:00

optional - Quality Checking a Recon

demo

Allison Stevens

Wednesday, April 6th - Multi-Modal / Future Directions / fMRI / Q&A

9:00 - 10:00

Basics of fMRI Analysis

talk

Doug Greve

10:00 - 10:15

break

10:15 - 11:30

FSFAST

talk

Doug Greve

11:30 - 12:30

FSFAST Tutorial

tutorial

staff

12:30 - 1:30

Lunch

--

--

1:00 - 1:30

Optional Lunch Talk- Motion-compensated neuroanatomical imaging

talk

Dylan Tisdall

1:30 - 2:00

Accuracy, Reliability and Validation

talk

David Salat

2:00 - 2:20

Future Directions: &do=get

talk

Bruce Fischl

2:20 - 2:45

break & Evaluation

2:45 - 3:45

Multi-Modal Integration

talk

Doug Greve

3:45 - 4:30

Multi-Modal Integration Tutorial

tutorial

staff

4:30 - 5:00

Question and Answer Session, FsQuiz

talk

staff

FsTutorial/April2011CourseSchedule (last edited 2011-04-06 12:35:21 by AllisonStevens)