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|| 3:15 - 3:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl||
|| 3:45 - 4:45 || Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]]|| tutorial || staff, Allison ||
|| 4:45 - 5:30 || Quality Checking a Recon || demo || Allison Stevens ||
|| 3:15 - 4:00 || Longitudinal tutorial; checking recon-all.log of failed subject; how to report bugs/ask questions on list; <<BR>>*anything that needs to be done to finish use case || tutorial || staff ||
|| 4:00 - 4:
30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl||
|| 4:30 - 5:30 || Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]]|| tutorial || staff, Allison ||
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|| 8:15 - 9:00 || Quality Checking a Recon || demo || Allison Stevens ||
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|| 9:00 - 10:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Doug Greve ||
|| 10:15 - 11:15 || [[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] || tutorial || staff ||
|| 11:15 - 11:30 || '''break''' || || ||
|| 11:30 - 12:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
|| 12:00 - 1:00 || '''Lunch''' || -- || -- ||
|| 1:00 - 1:20 || Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||
|| 1:20 - 2:20 || FSFAST || talk || Doug Greve ||
|| 2:20 - 3:15 || FSFAST || tutorial || staff ||
|| 3:15 - 3:30 || '''break''' || || ||
|| 3:
30 - 4:00 || Longitudinal tutorial; checking recon-all.log of failed subject; how to report bugs/ask questions on list; <<BR>>*anything that needs to be done to finish use case || tutorial || staff ||
|| 4:00 - 4:30 || Evaluation || online || attendees ||
|| 8:30 - 9:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Doug Greve ||
|| 9:45 - 10:45 || [[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] || tutorial || staff ||
|| 10:45 - 11:00 || '''break''' || || ||
|| 11:00 - 11:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
|| 11:30 - 12:30 || '''Lunch''' || -- || -- ||
|| 12:10 - 12:30 || ''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' || ''talk'' || ''Dylan Tisdall'' ||
|| 12:30 - 12:5
0 || Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||
|| 12:50 - 2:15 || FSFAST || talk || Doug Greve ||
|| 2:15 - 2:30 || '''break''' || || ||
|| 2:30 - 3:30
|| FSFAST || talk || Doug Greve ||
|| 3:30 - 4:30 || FSFAST || tutorial || staff ||

FreeSurfer Course, April 4 and 5, 2010

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, April 4th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting

Time

Title

Type

Lecturer

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly

tutorial

Allison Stevens

8:30 - 9:00

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Bruce Fischl

9:30 - 10:30

Analyzing the Individual Subject

talk

Doug Greve

10:30 - 10:45

break

10:45 - 11:15

Tkmedit/Tksurfer demonstration

demo

Doug Greve

11:15 - 11:45

Interaction with Individual Subject Data Tutorial

tutorial

staff

11:45 - 12:15

Surface-based Smoothing/Surface-based Registration

talk

Doug Greve

12:15 - 1:15

Lunch

--

--

12:30 - 1:00

Optional Lunch Talk- FreeSurfer Applications

talk

David Salat

1:15 - 1:45

Intro to MR

talk

Dylan Tisdall

1:45 - 2:30

MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

2:30 - 2:45

break

2:45 - 3:15

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

3:15 - 4:00

Longitudinal tutorial; checking recon-all.log of failed subject; how to report bugs/ask questions on list;
*anything that needs to be done to finish use case

tutorial

staff

4:00 - 4:30

Failure Modes

talk

Bruce Fischl

4:30 - 5:30

Troubleshooting Demonstration, Troubleshooting Tutorial

tutorial

staff, Allison

5:30 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

Nick Schmansky

5:30 -

optional - Start Processing Your Own Data

one-on-one

Allison Stevens

Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion

Time

Title

Type

Lecturer

8:15 - 9:00

Quality Checking a Recon

demo

Allison Stevens

9:00 - 10:00

Group Analysis / GLM / Multiple Comparisons

talk

Mert Sabuncu

10:00 - 11:00

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

11:00 - 11:15

break

11:15 - 11:45

QDEC demonstration

demo

Nick Schmansky

11:45 - 12:30

Group Analysis - qdec Tutorial

tutorial

staff

12:30 - 1:30

Lunch

--

--

12:45 - 1:15

Optional Lunch Talk- Which What to Register

talk

Lilla Zollei

1:30 - 2:30

ROI Analysis

talk

Doug Greve

2:30 - 3:00

ROI Analysis Tutorial

tutorial

staff

3:00 - 3:30

Combined Volume and Surface Registration

talk

Lilla Zollei

3:30 - 3:45

break

3:45 - 4:15

Introduction to Diffusion Processing

talk

Lilla Zollei

4:15 - 5:15

Diffusion Tutorial

tutorial

staff

5:15 - 5:35

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

5:35 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

Nick Schmansky

5:35 -

optional - Start Processing Your Own Data

one-on-one

Allison Stevens

Wednesday, April 6th - Multi-Modal / Future Directions / fMRI / Q&A

8:30 - 9:45

Multi-Modal Integration

talk

Doug Greve

9:45 - 10:45

Multi-Modal Integration Tutorial

tutorial

staff

10:45 - 11:00

break

11:00 - 11:30

Accuracy, Reliability and Validation

talk

David Salat

11:30 - 12:30

Lunch

--

--

12:10 - 12:30

Optional Lunch Talk- Motion-compensated neuroanatomical imaging

talk

Dylan Tisdall

12:30 - 12:50

Future Directions: Inferring architectonic boundaries from in-vivo MRI

talk

Bruce Fischl

12:50 - 2:15

FSFAST

talk

Doug Greve

2:15 - 2:30

break

2:30 - 3:30

FSFAST

talk

Doug Greve

3:30 - 4:30

FSFAST

tutorial

staff

4:30 - 5:15

Question and Answer Session, FsQuiz

talk

staff

FsTutorial/April2011CourseSchedule (last edited 2011-04-06 12:35:21 by AllisonStevens)