| Deletions are marked like this. | Additions are marked like this. |
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| === 16, 17, & 18 (Sat., Sun., Mon.) April 2011 === | === 16, 17, & 18 April 2011 === |
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| The !FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of !FreeSurfer. Day 1 will be an introduction to !FreeSurfer (or a refresher for those more experienced). Day 2 will cover everything you need to know for analyzing your data. Topics are listed below. There are only 30 available spots for this course. The course will not cover FS-FAST or fMRI analysis. | The FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of FreeSurfer. Day 1 will be an introduction to FreeSurfer (or a refresher for those more experienced). Day 2 will cover everything you need to know for analyzing your data. Topics are listed below. There are only 30 available spots for this course. The course will not cover FS-FAST or fMRI analysis. |
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| Computers will be provided to all pairs of registrants, which will have !FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer). | Computers will be provided to all pairs of registrants, which will have FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer). |
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| ||8:30 - 9:00 ||'''Course Registration''' ||sign-in || [[attachment:brazil2009.jpg|staff]] || | ||8:30 - 9:00 ||'''Course Registration''' ||sign-in || staff || |
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||11:45 - 12:15 ||Tkmedit/Tksurfer demonstration ||demo || Nick Schmansky || ||11:15 - 11:45 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff || ||11:45- 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes]] ||talk || Allison Stevens || ||12:15 - 1:15 ||'''Lunch''' ||-- ||-- || |
||11:45 - 12:45 ||'''Lunch''' ||-- ||-- || |
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||1:15 - 2:15 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison || ||2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications]] ||talk || Nick Schmansky || ||3:15 - 3:30 ||'''break''' || || || ||3:30 - 4:15 || Registration Methods || talk || Lilla Zollei || ||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei || ||4:45 - 5:30 ||Longitudinal tutorial ||tutorial ||staff || |
||12:45 - 1:15 ||Tkmedit/Tksurfer demonstration ||demo || Nick Schmansky || ||1:15 - 2:15 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff || ||2:15 - 2:30 ||'''break''' || || || ||2:30- 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes]] ||talk || Allison Stevens || ||3:00 - 4:00 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison || ||4:00 - 4:30 ||Quality Checking a Recon ||demo ||Allison Stevens || ||4:30 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications]] ||talk || Nick Schmansky || |
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||8:15 - 9:00 ||Quality Checking a Recon ||demo ||Allison Stevens || ||9:00 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei || ||11:00 - 11:15 ||'''break''' || || || ||11:15 - 11:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk || Lilla Zollei || ||11:45 - 12:45 ||Diffusion Processing Tutorial ||tutorial ||staff || ||12:45 - 2:00 ||'''Lunch''' ||-- ||-- || |
||9:30 - 10:15 || Registration Methods || talk || Lilla Zollei || ||10:15 - 10:30 ||'''break''' || || || ||10:30 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei || ||11:00 - 11:45 ||Longitudinal tutorial ||tutorial ||staff || ||11:45 - 1:00 ||'''Lunch''' ||-- ||-- || |
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||1:45 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk || Allison Stevens || ||2:45 - 3:15 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || ||3:15 - 3:30 ||'''break''' || || || ||3:30 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || Lilla Zollei || ||4:30 - 5:00 ||QDEC demonstration ||demo ||Nick Schmansky || ||5:00 - 6:00 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff || ||5:00 - 6:00 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff || |
||1:00 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei || ||2:15 - 2:30 ||'''break''' || || || ||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Lilla Zollei || ||3:00 - 4:00 ||Diffusion Processing Tutorial ||tutorial ||staff || ||4:00 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk || Allison Stevens || ||4:45 - 5:15 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || |
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||8:30 - 9:45 ||FSFAST ||talk ||Doug Greve || ||9:45 - 10:00 ||'''break''' || || || ||10:00 - 11:00 ||FSFAST ||talk ||Doug Greve || ||11:00 - 12:00 ||FSFAST ||tutorial ||staff || ||12:00 - 1:00 ||'''Lunch''' ||-- ||-- || |
||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || Lilla Zollei || ||10:00 - 10:30 ||QDEC demonstration ||demo ||Nick Schmansky || ||10:30 - 10:45 ||'''break''' || || || ||10:45 - 11:45 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff || ||10:45 - 11:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff || ||11:45 - 1:00 ||'''Lunch''' ||-- ||-- || |
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| ||1:50 - 2:15 ||'''break''' & Evaluation || || || |
||1:00 - 2:15 ||FSFAST ||talk ||Doug Greve || ||2:15 - 2:30 ||'''break''' & Evaluation || || || ||2:30 - 3:30 ||FSFAST ||tutorial ||staff || |
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| ||4:30 - 5:00 ||Question and Answer Session, FsQuiz ||talk ||staff || | ||3:30 - 4:00 ||Question and Answer Session, FsQuiz ||talk ||staff || |
FreeSurfer Tutorial and Workshop in São Paulo, Brazil
16, 17, & 18 April 2011
The FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of FreeSurfer. Day 1 will be an introduction to FreeSurfer (or a refresher for those more experienced). Day 2 will cover everything you need to know for analyzing your data. Topics are listed below. There are only 30 available spots for this course. The course will not cover FS-FAST or fMRI analysis.
Computers will be provided to all pairs of registrants, which will have FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer).
The course will be held at São Paulo healthcare complex of HCFMUSP.
Contact: Pedro Paulo de M. Oliveira Jr. ( ppj at netfilter dot com dot br )
Location
Hospital das Clínicas - .kmz - Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil - (hotel,map)
The course will be held at the Cancer Center Building, in the 6th floor auditorium.
Monday, April 4th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting
Time |
Title |
Type |
Lecturer |
8:30 - 9:00 |
Course Registration |
sign-in |
staff |
9:00 - 9:30 |
tutorial |
Pedro Paulo |
|
9:30 - 10:00 |
Intro to FreeSurfer Jargon |
talk |
Allison Stevens |
10:00 - 10:30 |
talk |
Nick Schmansky |
|
10:30 - 10:45 |
break |
|
|
10:45 - 11:45 |
talk |
Allison Stevens |
|
11:45 - 12:45 |
Lunch |
-- |
-- |
12:45 - 1:15 |
Tkmedit/Tksurfer demonstration |
demo |
Nick Schmansky |
1:15 - 2:15 |
tutorial |
staff |
|
2:15 - 2:30 |
break |
|
|
2:30- 3:00 |
talk |
Allison Stevens |
|
3:00 - 4:00 |
Troubleshooting Demonstration, Troubleshooting Tutorial |
tutorial |
staff, Allison |
4:00 - 4:30 |
Quality Checking a Recon |
demo |
Allison Stevens |
4:30 - 5:00 |
talk |
Nick Schmansky |
Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion
Time |
Title |
Type |
Lecturer |
9:30 - 10:15 |
Registration Methods |
talk |
Lilla Zollei |
10:15 - 10:30 |
break |
|
|
10:30 - 11:00 |
talk |
Lilla Zollei |
|
11:00 - 11:45 |
Longitudinal tutorial |
tutorial |
staff |
11:45 - 1:00 |
Lunch |
-- |
-- |
1:00 - 2:15 |
talk |
Lilla Zollei |
|
2:15 - 2:30 |
break |
|
|
2:30 - 3:00 |
talk |
Lilla Zollei |
|
3:00 - 4:00 |
Diffusion Processing Tutorial |
tutorial |
staff |
4:00 - 4:45 |
talk |
Allison Stevens |
|
4:45 - 5:15 |
tutorial |
staff |
Wednesday, April 6th - Multi-Modal / Future Directions / fMRI / Q&A
9:00 - 10:00 |
talk |
Lilla Zollei |
|
10:00 - 10:30 |
QDEC demonstration |
demo |
Nick Schmansky |
10:30 - 10:45 |
break |
|
|
10:45 - 11:45 |
tutorial |
staff |
|
10:45 - 11:45 |
tutorial |
staff |
|
11:45 - 1:00 |
Lunch |
-- |
-- |
1:00 - 2:15 |
FSFAST |
talk |
Doug Greve |
2:15 - 2:30 |
break & Evaluation |
|
|
2:30 - 3:30 |
FSFAST |
tutorial |
staff |
3:30 - 4:00 |
Question and Answer Session, FsQuiz |
talk |
staff |