• FsTutorial
• Diffusion
• DTIscripts

Be sure to source FreeSurfer before trying to run any of the following scripts.

subjects.csh

DiffPreproc.csh

{{{#!/bin/tcsh –ef source $SUBJECTS_DIR/scripts/subjects.csh

foreach subj ($SUBJECTS)

• echo $subj set outdir = $SUBJECTS_DIR/$subj/LZDiff mkdir -p $outdir set dicomfile = $SUBEJCTS_DIR/$subj/orig/*-1.dcm set cmd = (dt_recon --i $dicomfile --s $subj --o $outdir) echo $cmd eval $cmd

end }}}