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| === FreeSurfer/FS-FAST Course, June 4 and 5, 2009 === | == FreeSurfer/FS-FAST Course, June 4 and 5, 2009 == |
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|| 8:00 - 8:30 || '''optional -''' [[attachment:freesurfer.unix_tutorial.apr2009.ppt|Unix Tutorial for FreeSurfer Users|&do=get]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] || tutorial || Allison Stevens || || 8:30 - 9:00 || Course Registration || sign-in || [[attachment:boston_fs_course_jan2009.jpg|staff|&do=get]] || || 9:00 - 9:30 || [[attachment:freesurfer.intro.2009.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl || || 9:30 - 10:00 || [[attachment:freesurfer.reliability.2009.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat || || 10:00 - 10:15 || '''break''' || || || || 10:15 - 11:15 || [[attachment:fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Bruce Fischl || || 11:15 - 11:45 || Tkmedit/Tksurfer demonstration || demo || Doug Greve || || 11:45 - 12:15 || [[FsTutorial/OutputData|Interaction with Individual Subject Data]] || tutorial || staff || || 12:15 - 1:00 || '''lunch''' || || || || 1:00 - 1:30 || [[attachment:freesurfer.applications.2009.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat || || 1:30 - 2:00 || [[attachment:fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve || || 2:00 - 2:15 || '''break''' || || || || 2:15 - 3:00 || [[attachment:freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Doug Greve || || 3:00 - 4:00 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit]] || tutorial || staff || || 4:00 - 4:15 || QDEC demonstration || demo || Nick Schmansky || || 4:15 - 5:00 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec]] || tutorial || staff || || 5:00 - 5:30 || [[attachment:freesurfer.inferring_architectonics.2009.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl || || 5:30 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky || || 5:30 - || '''optional -''' [[attachment:runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens || |
|| 2:00 - 2:30 || [[attachment:freesurfer.intro.2009.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl || || 2:30 - 3:30 || [[attachment:fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Bruce Fischl || || 3:30 - 3:45 || [[attachment:freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl|| || 3:45 - 4:00 || Tkmedit/Tksurfer demonstration || demo || Doug Greve || || 4:00 - 4:15 || '''break''' || || || || 4:15 - 5:00 || [[FsTutorial/OutputData|Interaction with Individual Subject Data]] || tutorial || staff || || 5:00 - 6:00 || [[FsTutorial/TroubleshootingData|Troubleshooting]], Troubleshooting demonstration || tutorial || staff, Allison Stevens || |
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|| 9:00 - 10:00 || [[attachment:fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve || || 10:00 - 10:45 || [[FsTutorial/AnatomicalROI|ROI Analysis]] || tutorial || staff || || 10:45 - 11:00 || '''break''' || || || || 11:00 - 11:15 || [[attachment:freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl|| || 11:15 - 12:15 || [[FsTutorial/TroubleshootingData|Troubleshooting]], Troubleshooting demonstration || tutorial || staff, Allison || || 12:15 - 1:00 || '''lunch''' || || || || 1:00 - 2:15 || [[attachment:fs.multimodal-integration.ppt|Multi-Modal Integration: ROI and Surface-based Analysis|&do=get]] || talk || Doug Greve || || 2:15 - 3:15 || [[FsTutorial/MultiModal|Multi-Modal Integration]] || tutorial || staff || || 3:15 - 3:30 || '''break''' || || || || 3:30 - 4:30 || Future Directions of !FreeSurfer: || || || || 3:30 - 3:50 || [[attachment:CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei || || 3:50 - 4:10|| [[attachment:tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki || || 4:10 - 4:30 || [[attachment:HippocampalSubfields-Koen.ppt|Automated segmentation of hippocampal subfields|&do=get]] || talk || Koen Van Leemput || || 4:30 - 5:15 || Question and Answer Session, FsQuiz || talk || staff || |
|| 9:00 - 9:30 || [[attachment:fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve || || 9:30 - 10:30 || [[attachment:freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Doug Greve || || 10:30 - 11:00 || QDEC demonstration || demo || Nick Schmansky || || 11:00 - 11:15 || '''break''' || || || || 11:15 - 12:15 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit]] || tutorial || staff || || 12:15 - 1:00 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec]] || tutorial || staff || || 1:00 - 2:00|| '''lunch''' || || || || 2:00 - 3:00 || [[attachment:freesurfer.fsfast.ppt|Functional Analysis with FS-FAST|&do=get]] || talk || Doug Greve || || 3:00 - 6:00 || [[FsFastTutorial]] || tutorial || staff || |
FreeSurfer/FS-FAST Course, June 4 and 5, 2009
MGH, Charlestown Navy Yard, Conference Room A
Thursday, June 4th - Introduction / Single Subject / Troubleshooting
Time |
Title |
Type |
Lecturer |
2:00 - 2:30 |
talk |
Bruce Fischl |
|
2:30 - 3:30 |
talk |
Bruce Fischl |
|
3:30 - 3:45 |
talk |
Bruce Fischl |
|
3:45 - 4:00 |
Tkmedit/Tksurfer demonstration |
demo |
Doug Greve |
4:00 - 4:15 |
break |
|
|
4:15 - 5:00 |
tutorial |
staff |
|
5:00 - 6:00 |
Troubleshooting, Troubleshooting demonstration |
tutorial |
staff, Allison Stevens |
Thursday, June 5th - Surface-based Smoothing and Registration / Group Analysis
Time |
Title |
Type |
Lecturer |
9:00 - 9:30 |
talk |
Doug Greve |
|
9:30 - 10:30 |
talk |
Doug Greve |
|
10:30 - 11:00 |
QDEC demonstration |
demo |
Nick Schmansky |
11:00 - 11:15 |
break |
|
|
11:15 - 12:15 |
tutorial |
staff |
|
12:15 - 1:00 |
tutorial |
staff |
|
1:00 - 2:00 |
lunch |
|
|
2:00 - 3:00 |
talk |
Doug Greve |
|
3:00 - 6:00 |
tutorial |
staff |