ces.bb.stats

# Title Segmentation Statistics
#
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
# cmdline mri_segstats --seg /mnt/macmini/RW_tutorial_data/qdec/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz --ctab /mnt/macmini/apps/centos4_x86_64/freesurfer/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i ces.anat.bb.mgh --sum ces.bb.stats
# sysname  Linux
# hostname qdec
# machine  x86_64
# user     nmrclass
# anatomy_type volume
#
# SegVolFile /mnt/macmini/RW_tutorial_data/qdec/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz
# SegVolFileTimeStamp  2011/12/19 13:53:31
# ColorTable /mnt/macmini/apps/centos4_x86_64/freesurfer/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2013/05/13 20:31:02
# InVolFile  ces.anat.bb.mgh
# InVolFileTimeStamp  2014/10/22 17:24:29
# InVolFrame 0
# Only reporting non-empty segmentations
# VoxelVolume_mm3 1
# TableCol  1 ColHeader Index
# TableCol  1 FieldName Index
# TableCol  1 Units     NA
# TableCol  2 ColHeader SegId
# TableCol  2 FieldName Segmentation Id
# TableCol  2 Units     NA
# TableCol  3 ColHeader NVoxels
# TableCol  3 FieldName Number of Voxels
# TableCol  3 Units     unitless
# TableCol  4 ColHeader Volume_mm3
# TableCol  4 FieldName Volume
# TableCol  4 Units     mm^3
# TableCol  5 ColHeader StructName
# TableCol  5 FieldName Structure Name
# TableCol  5 Units     NA
# TableCol  6 ColHeader Mean
# TableCol  6 FieldName Intensity Mean
# TableCol  6 Units     unknown
# TableCol  7 ColHeader StdDev
# TableCol  7 FieldName Itensity StdDev
# TableCol  7 Units     unknown
# TableCol  8 ColHeader Min
# TableCol  8 FieldName Intensity Min
# TableCol  8 Units     unknown
# TableCol  9 ColHeader Max
# TableCol  9 FieldName Intensity Max
# TableCol  9 Units     unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units     unknown
# NRows 4
# NTableCols 10
# ColHeaders  Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
  1 1021      2586     2586.0  ctx-lh-pericalcarine             112.9635   146.7148   -64.4940   713.9155   778.4095
  2 1022     12413    12413.0  ctx-lh-postcentral                25.1931    75.2689  -232.6694   461.8479   694.5173
  3 1030     15147    15147.0  ctx-lh-superiortemporal           27.9571    71.8730  -143.5521   461.8479   605.4000
  4  17      4385     4385.0  Left-Hippocampus                   1.2777    23.2404  -113.9432   116.7186   230.6618

ces.abs-masked.bb.stats

# Title Segmentation Statistics
#
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
# cmdline mri_segstats --seg /mnt/macmini/RW_tutorial_data/qdec/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz --ctab /mnt/macmini/apps/centos4_x86_64/freesurfer/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i ces.anat.bb.mgh --sum ces.abs-masked.bb.stats --mask sig.anat.bb.mgh --maskthresh 2 --masksign abs
# sysname  Linux
# hostname qdec
# machine  x86_64
# user     nmrclass
# anatomy_type volume
#
# SegVolFile /mnt/macmini/RW_tutorial_data/qdec/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz
# SegVolFileTimeStamp  2011/12/19 13:53:31
# ColorTable /mnt/macmini/apps/centos4_x86_64/freesurfer/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2013/05/13 20:31:02
# MaskVolFile  sig.anat.bb.mgh
#   MaskVolFileTimeStamp  2014/10/22 17:34:54
#   MaskThresh 2.000000
#   MaskSign   abs
#   MaskFrame  0
#   MaskInvert 0
# InVolFile  ces.anat.bb.mgh
# InVolFileTimeStamp  2014/10/22 17:24:29
# InVolFrame 0
# Only reporting non-empty segmentations
# VoxelVolume_mm3 1
# TableCol  1 ColHeader Index
# TableCol  1 FieldName Index
# TableCol  1 Units     NA
# TableCol  2 ColHeader SegId
# TableCol  2 FieldName Segmentation Id
# TableCol  2 Units     NA
# TableCol  3 ColHeader NVoxels
# TableCol  3 FieldName Number of Voxels
# TableCol  3 Units     unitless
# TableCol  4 ColHeader Volume_mm3
# TableCol  4 FieldName Volume
# TableCol  4 Units     mm^3
# TableCol  5 ColHeader StructName
# TableCol  5 FieldName Structure Name
# TableCol  5 Units     NA
# TableCol  6 ColHeader Mean
# TableCol  6 FieldName Intensity Mean
# TableCol  6 Units     unknown
# TableCol  7 ColHeader StdDev
# TableCol  7 FieldName Itensity StdDev
# TableCol  7 Units     unknown
# TableCol  8 ColHeader Min
# TableCol  8 FieldName Intensity Min
# TableCol  8 Units     unknown
# TableCol  9 ColHeader Max
# TableCol  9 FieldName Intensity Max
# TableCol  9 Units     unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units     unknown
# NRows 4
# NTableCols 10
# ColHeaders  Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
  1 1021      1512     1512.0  ctx-lh-pericalcarine             181.2534   158.2858   -64.4940   713.9155   778.4095
  2 1022      5646     5646.0  ctx-lh-postcentral                58.9172    98.5777  -232.6694   461.8479   694.5173
  3 1030      5203     5203.0  ctx-lh-superiortemporal           82.5216    96.9229  -143.5521   461.8479   605.4000
  4  17       116      116.0  Left-Hippocampus                  16.8604    64.3484  -113.9432   116.7186   230.6618

ces.pos-masked.bb.stats

# Title Segmentation Statistics
#
# generating_program mri_segstats
# cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $
# cmdline mri_segstats --seg /mnt/macmini/RW_tutorial_data/qdec/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz --ctab /mnt/macmini/apps/centos4_x86_64/freesurfer/FreeSurferColorLUT.txt --id 1021 --id 1022 --id 1030 --id 17 --i ces.anat.bb.mgh --sum ces.pos-masked.bb.stats --mask sig.anat.bb.mgh --maskthresh 2 --masksign pos
# sysname  Linux
# hostname qdec
# machine  x86_64
# user     nmrclass
# anatomy_type volume
#
# SegVolFile /mnt/macmini/RW_tutorial_data/qdec/buckner_data/tutorial_subjs/fbirn-anat-101.v4/mri/aparc+aseg.mgz
# SegVolFileTimeStamp  2011/12/19 13:53:31
# ColorTable /mnt/macmini/apps/centos4_x86_64/freesurfer/FreeSurferColorLUT.txt
# ColorTableTimeStamp 2013/05/13 20:31:02
# MaskVolFile  sig.anat.bb.mgh
#   MaskVolFileTimeStamp  2014/10/22 17:34:54
#   MaskThresh 2.000000
#   MaskSign   pos
#   MaskFrame  0
#   MaskInvert 0
# InVolFile  ces.anat.bb.mgh
# InVolFileTimeStamp  2014/10/22 17:24:29
# InVolFrame 0
# Only reporting non-empty segmentations
# VoxelVolume_mm3 1
# TableCol  1 ColHeader Index
# TableCol  1 FieldName Index
# TableCol  1 Units     NA
# TableCol  2 ColHeader SegId
# TableCol  2 FieldName Segmentation Id
# TableCol  2 Units     NA
# TableCol  3 ColHeader NVoxels
# TableCol  3 FieldName Number of Voxels
# TableCol  3 Units     unitless
# TableCol  4 ColHeader Volume_mm3
# TableCol  4 FieldName Volume
# TableCol  4 Units     mm^3
# TableCol  5 ColHeader StructName
# TableCol  5 FieldName Structure Name
# TableCol  5 Units     NA
# TableCol  6 ColHeader Mean
# TableCol  6 FieldName Intensity Mean
# TableCol  6 Units     unknown
# TableCol  7 ColHeader StdDev
# TableCol  7 FieldName Itensity StdDev
# TableCol  7 Units     unknown
# TableCol  8 ColHeader Min
# TableCol  8 FieldName Intensity Min
# TableCol  8 Units     unknown
# TableCol  9 ColHeader Max
# TableCol  9 FieldName Intensity Max
# TableCol  9 Units     unknown
# TableCol 10 ColHeader Range
# TableCol 10 FieldName Intensity Range
# TableCol 10 Units     unknown
# NRows 4
# NTableCols 10
# ColHeaders  Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range
  1 1021      1408     1408.0  ctx-lh-pericalcarine             198.1904   150.7542    32.1526   713.9155   681.7629
  2 1022      4078     4078.0  ctx-lh-postcentral               105.7220    71.3426    19.5321   461.8479   442.3158
  3 1030      4384     4384.0  ctx-lh-superiortemporal          107.2234    84.5133    25.4251   461.8479   436.4228
  4  17        57       57.0  Left-Hippocampus                  77.5613    28.2381    43.2457   116.7186    73.4729

ces.pos-masked.vol.stats

Measure:volume  ctx-lh-pericalcarine    ctx-lh-postcentral      ctx-lh-superiortemporal Left-Hippocampus
0       1408.0  4077.0  4382.0  57.0
1       1246.0  4780.0  4049.0  186.0
2       609.0   4057.0  2990.0  121.0
3       843.0   2928.0  2236.0  146.0
4       1614.0  4003.0  3873.0  232.0

ces.abs-masked.mean.stats

Measure:mean    ctx-lh-pericalcarine    ctx-lh-postcentral      ctx-lh-superiortemporal Left-Hippocampus
0       181.2534        58.9172 82.5216 16.8604
1       162.6065        70.9748 78.5134 -1.1652
2       264.1356        38.3964 73.2994 -42.7581
3       182.7722        74.2692 97.7955 31.554
4       118.7494        57.6731 96.149  10.9517

ces.pos-masked.mean.stats

Measure:mean    ctx-lh-pericalcarine    ctx-lh-postcentral      ctx-lh-superiortemporal Left-Hippocampus
0       198.2415        105.722   107.2234  77.5613
1       232.2992        108.0577  121.9527  37.9277
2       336.5665        111.2593  136.4619  81.3814
3       196.1099        81.4932   127.5857  77.9514
4       120.5139        91.797    113.7618  39.2072

FsTutorial/MultiModalFmriIndividual/BbStats (last edited 2017-03-23 13:37:38 by AndrewHoopes)