Miscellaneous FreeSurfer Downloads
Automated Defacing Tools
Note: A license file is no longer necessary to use these tools:
Use gunzip to decompress these downloads, ie.:
gunzip mri_deface-v1.22-Linux64.gz cp mri_deface-v1.22-Linux64.gz mri_deface chmod a+x mri_deface gunzip talairach_mixed_with_skull.gca.gz gunzip face.gca.gz
Then, example usage, using your orig.mgz:
mri_deface orig.mgz talairach_mixed_with_skull.gca face.gca orig_defaced.mgz
Sample MRI Data
bert.recon.tgz: Reconstructed data
bert.func.tar.gz: Functional data
fbert-feat.tgz: Functional data for FS/FSL-FEAT tutorial
bert.raw.tar.gz: Raw anatomical data
fsaverage.tar.gz: data used by mris_glm (link to average7)
MINC Toolkit
- Note: the MINC toolkit is already included in the Freesurfer 'full' installation (in $FREESURFER_HOME/mni)
- Pre-built binaries:
3D Slicer
See Slicer
Freesurfer Distribution Site