* [[OpenNeuro]]
 * [[Slicer|3D Slicer]]
 * [[FSL]]
 * [[http://afni.nimh.nih.gov/|AFNI/NIfTI/SUMA]]
 * [[http://www.fil.ion.ucl.ac.uk/spm/|SPM - Statistical Parametric Mapping]]
 * [[http://www.nitrc.org/|NITRC]]
 * [[http://itunes.apple.com/us/app/isurf-brainview/id381072423?mt=8|iSurf]] - iPhone/iPad app
 * [[http://nipy.sourceforge.net/nipype/index.html|Nipype]] - Neuroimaging in Python, w/ FreeSurfer interfaces
 * [[http://mindboggle.info/data.html|Mindboggle-101 data]] - Manually labeled anatomical regions for 101 healthy subjects
 * [[http://martinos.org/mne/|MNE - M/EEG data analysis using FreeSurfer meshes and surface registration]]
 * [[http://neuroimage.usc.edu/brainstorm/Introduction|Brainstorm]] - See [[Brainstorm|Integration with FreeSurfer]]
 * [[https://github.com/mathijsraemaekers/Cgrid-toolbox|Cgrid Toolbox]] - A toolbox for imposing cartesian grids on !FreeSurfer ROIs
 * MINC Toolkit 
   * Note: the MINC toolkit is already included in the Freesurfer 'full' installation (in $FREESURFER_HOME/mni)
   * Source code [[https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/src/mni-1.4-srcbuild.tar.gz|bundle]] and [[https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/src/mni.srcbuild.README.txt|README]]
   * Pre-built binaries:
     * [[https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/binaries/rh9/mni-1.4_rh9.tar.gz|Linux rh9,fc2,centos4]]
     * [[https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/binaries/centos4_x86_64/mni-1.4-centos4_x86_64.tar.gz|Linux centos4_x86_64]]
     * [[https://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/binaries/tiger/packages-MacOSX-tiger.tar.gz|Mac OS X]]