=ADNI60 testing for v6.0 release=

main ADNI wiki page- AdniReconNotes

ADNI60 dev test 01-20-15

frozen version of dev used: /space/avebury/1/users/almoreau/dev-2015-01-20

data here: /autofs/cluster/freesurfer/test/adni60/release_tests/fsdev-15-01-20

NOTE (NJS): the problem where cerebellum overlaps into the surfaces was fixed on 20jan (but didn't make it into dev until 21jan), so this problem can be ignored in the run using dev-2015-01-20. to run the fix, use the latest dev and run this: recon-all -s subjid -apas2aseg -aparc2aseg

Notes on subjects:

Controls

SubjID

Notes

1288

including too much dura, (c125), midline surfaces squiggly at spots, cerebellar wings overextend

0934

small holes in the cortex (c141)- not good. cerebellar wings overextend.

0886

small holes in the cortex (c131, c136)- not good. cerebellar wings overextend.

0545

surfaces messed up near medial side of temporal lobes. excluding part of bottom right temporal lobe gyrus (c124).

0813

inferior medial surfaces jagged. surfaces messed up near medial side of temporal lobes.

1301

0123

1251

0369

0403

0031

0657

0257

0866

0538

MCI Stable

SubjID

Notes

0919

surfaces messed up near medial side of temporal lobes (c144).

0169

surfaces messed up near medial side of temporal lobes (c131).pial cutting thru white surface (s82, c167). top left pial surface messed up (c103).

0389

skull stripping harsh in posterior of midline (c128). a70, c149, s114. surfaces of right temporal lobe wrong (c146-136).

0276

0698

0746

0176

0324

0160

0501

1182

0544

1028

1314

0464

MCI Progressive

SubjID

Notes

0231

0041

0204

0042

0101

0249

1010

0750

0057

0187

0126

1282

0839

0227

0904

SubjID

Notes

0029

0606

0543

0083

0341

0889

0786

0010

including fair amount of dura, surfaces inaccurate around temporal lobes. aseg- cerebellar wings extend too much, messy (could be b/c AD brain), wm hyperintensities in dura,

0328

0535

0093

0474

0891

0129

1205

ADNI60 dev test 02-16-15

frozen version of dev used: /space/avebury/1/users/almoreau/dev-2015-02-16

data here: /cluster/freesurfer/test/adni60/release_tests/fsdev-15-02-16

*Bruce made some changes from initial errors discovered in 1/20/15 dev test above, so reran all of the subjects with the updated dev.

Controls

SubjID

Notes

1288

0934

0886

0545

0813

1301

0123

1251

0369

0403

0031

0657

0257

0866

0538

MCI Stable

SubjID

Notes

0919

0169

0389

0276

0698

0746

0176

0324

0160

0501

1182

0544

1028

1314

0464

MCI Progressive

SubjID

Notes

0231

0041

0204

0042

0101

0249

1010

0750

0057

0187

0126

1282

0839

0227

0904

AD

SubjID

Notes

0029

0606

0543

0083

0341

0889

0786

0010

0328

0535

0093

0474

0891

0129

1205