BrainPET

HI

Aether-Mirror Version

PseudoCT mu-map generation

This function generates pseudoCT mu-map using SPM8 atlas-based method (David Izquierdo-Garcia et al.)

$/!\$ Edit conflict - other version:

Bullet list

item 1
item 2, with gap
item 3
- item 3.1

perl brainPET_pCT_AeMir.pl -i /<DIR>/<SUJID>/MR/MPRAGE -f 107000-000005-000001.dcm -c 0

$/!\$ Edit conflict - your version:

Bullet list

item 1

perl brainPET_pCT_AeMir.pl -i /<DIR>/<SUJID>/MR/MPRAGE -f 107000-000005-000001.dcm -c 0

item 2

$/!\$ End of edit conflict

Supporting Functions

Denoise MPRAGE

perl brainPET_denoise_mprage.pl -i /<DIR>/<SUBJID>/MR_PET/cp_iso_mprage.nii -t 25 -s 0

ifile2nifti

perl brainPET_ifile2nifti.pl -i /<DIR>/file.i

-  ⇤ ← Revision 1 as of 2019-06-20 14:18:26 → 
  Size: 23
  Editor: MorganFogarty
  Comment:
+   ← Revision 10 as of 2021-02-17 19:06:16 → ⇥
  Size: 1692
  Editor: MeenaMakary
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
-khjdafhkahjkadhjkahjk
+## page was renamed from brainPET
## page was renamed from MyNewPage
## Please edit system and help pages ONLY in the master wiki!
## For more information, please see MoinMoin:MoinDev/Translation.
## IMPORTANT NOTE:
## When you use this page as a template for creating your project page:
##  * please remove all lines starting with two hashes (##)
##  * except the acl line, please keep that, but remove one hash, so it reads #acl ...
##  * fix the acl line so it has the correct page instead of the sample Project/...Group
##acl Project/AdminGroup:admin,read,write,delete,revert Project/ReadWriteGroup:read,write Project/ReadGroup:read
##master-page:Unknown-Page
##master-date:Unknown-Date
#format wiki
#language en
'''Index'''
<<TableOfContents(2)>>

= BrainPET =
{{{
HI
}}}

= Aether-Mirror Version =
== PseudoCT mu-map generation ==
This function generates pseudoCT mu-map using SPM8 atlas-based method (David Izquierdo-Garcia et al.)

---- /!\ '''Edit conflict - other version:''' ----

= Bullet list =
 * item 1

 * item 2, with gap
 * item 3
   * item 3.1


{{{
perl brainPET_pCT_AeMir.pl -i /<DIR>/<SUJID>/MR/MPRAGE -f 107000-000005-000001.dcm -c 0
}}}

---- /!\ '''Edit conflict - your version:''' ----

= Bullet list =
 * item 1
{{{
perl brainPET_pCT_AeMir.pl -i /<DIR>/<SUJID>/MR/MPRAGE -f 107000-000005-000001.dcm -c 0
}}}

 * item 2

---- /!\ '''End of edit conflict''' ----

= Supporting Functions =
== Denoise MPRAGE ==
{{{
perl brainPET_denoise_mprage.pl -i /<DIR>/<SUBJID>/MR_PET/cp_iso_mprage.nii -t 25 -s 0
}}}

== ifile2nifti ==
{{{
perl brainPET_ifile2nifti.pl -i /<DIR>/file.i
}}}

= Development Version =