Differences between revisions 9 and 11 (spanning 2 versions)
⇤ ← Revision 9 as of 2021-02-17 19:05:29 →
Size: 1399
Editor: MeenaMakary
Comment:
← Revision 11 as of 2021-02-17 19:11:18 → ⇥
Size: 1481
Editor: MeenaMakary
Comment:
Deletions are marked like this. Additions are marked like this.
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= Bullet list =
 * item 1		 ---- /!\ '''Warning''' ----
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 * item 2, with gap
 * item 3
   * item 3.1

  * For DICOM input:
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}}}

 * For NIFTI input
{{{
perl brainPET_pCT_AeMir.pl -i /<DIR>/<SUJID>/MR_PET -f cp_iso_mprage.nii -c 0

Index

Contents

  1. BrainPET
  2. Aether-Mirror Version
    1. PseudoCT mu-map generation
  3. Supporting Functions
    1. Denoise MPRAGE
    2. ifile2nifti
  4. Development Version

BrainPET

HI

Aether-Mirror Version

PseudoCT mu-map generation

This function generates pseudoCT mu-map using SPM8 atlas-based method (David Izquierdo-Garcia et al.)

/!\ Warning

  • For DICOM input: 

perl brainPET_pCT_AeMir.pl -i /<DIR>/<SUJID>/MR/MPRAGE -f 107000-000005-000001.dcm -c 0
  • For NIFTI input 

perl brainPET_pCT_AeMir.pl -i /<DIR>/<SUJID>/MR_PET -f cp_iso_mprage.nii -c 0

Supporting Functions

Denoise MPRAGE

perl brainPET_denoise_mprage.pl -i /<DIR>/<SUBJID>/MR_PET/cp_iso_mprage.nii -t 25 -s 0

ifile2nifti

perl brainPET_ifile2nifti.pl -i /<DIR>/file.i

Development Version

BrainPET (last edited 2021-11-09 12:13:59 by MeenaMakary)