Buckner40 Notes
The 40 subjects in the [wiki:FsTutorial/Data buckner_data/group_study tutorial distribution] have each been inspected for defects. These notes, combined with using tkmedit and tksurfer to observe the defects, serve as a good tutorial on what is considered 'good' and 'bad' output.
Note: Some of these subjects are used as the example cases in the Morphometry and Reconstruction tutorial (specifically, subjects 008, 039, 095, 108, and 111).
No. |
Inspection notes |
004 |
LH temp lobe surfaces aren't good (coronal slice 116) |
008 |
LH white surf in lateral vent not good (coronal slice 67) |
|
RH pial surf misses a lot of temp lobe (slice 147) |
017 |
LH surfs in lateral vent not good (coronal slice 49) |
021 |
LH artery is little island of pial surface (coronal slice 139) |
032 |
not bad overall (pial in frontal lobes could extend a bit) |
039 |
bad talairach alignment |
040 |
LH pial surf a bit tangled (slice 92 - vol index 145 142 92) |
045 |
superior CC cut plane too much in LH |
|
RH pial sur misses a lot of temp lobe (slice 139) |
|
LH pial sur misses a lot of frontal & temp lobe (slice 146) |
049 |
not bad overall |
067 |
good overall |
073 |
good overall |
074 |
temp lobes - lose some pial and white surfs (slice 147) |
080 |
very bad, most of inferior brain surfs are missing |
084 |
good overall |
091 |
not bad overall |
092 |
good overall |
093 |
good overall |
095 |
very bad - CC plane in medial LH, pial surf in RH not good (slice 68) |
097 |
RH temp lobe loses pial (slice 146), LH pial wonky laterally (166) |
099 |
RH frontal lobe surfs on slice 150? (132 165 150) otherwise good |
102 |
good overall |
103 |
a chunk of RH artery in pial surface (slice 145) otherwise good |
106 |
good overall |
108 |
very bad -- RH cereb missing, RH temp lobes losing surfs (145) |
|
inferior RH occip lobe labeled as cereb cortex in aseg 95 146 87 |
111 |
temporal lobe: disconnection of thin gyri, slices 133-135 |
|
frontal lobe: misclassification of non-wm as wm, slice 179+-10 |
|
lateral ventricle: not filled, slice 50-168 |
114 |
not very good - overall loss of outer pial surface |
123 |
not bad overall |
124 |
good overall |
128 |
not bad overall |
129 |
not bad overall |
130 |
good overall |
131 |
good overall |
133 |
not bad overall |
136 |
good overall |
138 |
not bad overall |
140 |
good overall |
141 |
good overall |
144 |
very bad - CC cutting plane in medial RH, LH lat ventr surfs not good, |
|
artifacts in scan (e.g. slice 125) |
145 |
bad seg - orbital fat labeled as RH wm (slice 173), L/RH temp lobe, surfs 143 |
149 |
not bad overall |