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## see CommandTemplate and dtrecon as exmaples ## Note: This page was created with the CommandTemplate
##
## If you're modifying this page please take a look at the
## latest version of CommandTemplate to ensure that you're
## using the latest version of the CommandTemplate
##
## See HelpOnCommandTemplate for description of formatting

'''Index'''
<<TableOfContents>>

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{{{
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}}}
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{{{
command [argA] -flag1 [arg2] -flag2 [arg3] [<options>]
}}}
command argA argB -flag1 arg1 -flag2 arg2 [-flag3 arg3] [-flag4 arg4]
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= Positional Arguments =
{{{
[argA]
  description
}}}
= Arguments =
== Positional Arguments ==
|| argA || brief description || detailed description (eg, help file information) ||
|| argB || brief description || detailed description (eg, help file information) ||
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= Required Flagged Arguments =
{{{
-flag1 [arg1]
  description
  description
== Required Flagged Arguments ==
|| -flag1 arg1 || brief description || detailed description (eg, help file information) ||
|| -flag2 arg2 || brief description || detailed description (eg, help file information) ||
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-flag2 [arg2]
  description
  description
}}}
== Optional Flagged Arguments ==
|| -flag3 arg3 || brief description ||detailed description (eg, help file information) ||
|| -flag4 arg4 || brief description ||detailed description (eg, help file information) ||
 
= Outputs =
|| volume1 || description ||
|| volume2 || description ||
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= Optional Flagged Arguments =
{{{
-flag3 [arg3]
  description
  description
= Description =
description
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-flag4 [arg4]
  description
  description
}}}
= Examples =
== Example 1 ==
command foo -i f -o out
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= Outputs =
{{{
volume1 - description
volume2 - description
}}}
description
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= Example 1 =
{{{

command foo -i f -o out
}}}
== Example 2 ==
command foo -i f -o out -f fvalue
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= Example 2 =
{{{
command foo -i f -o out -f fvalue
}}}
description

= Bugs =
None
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["othercommand1"], ["othercommand2"]

= Author =
JaneSmith
[[othercommand1]], [[othercommand2]]
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= References =
## For example: ["Belliveau1991"]
NameYear

= Description =
description

= Reporting Bugs =
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>
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## Suitable for cutting and pasting into publication.
## No WikiLinks should be used.
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= Category =
## For example: CategoryFreeSurferCommandVolumeConversion
Category``Stream``Function
= References =
[[References/Lastname###]]

= Reporting Bugs =
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

= Author/s =
JaneSmith

Index

Name

command - 1/2 sentence summary

Synopsis

command argA argB -flag1 arg1 -flag2 arg2 [-flag3 arg3] [-flag4 arg4]

Arguments

Positional Arguments

argA

brief description

detailed description (eg, help file information)

argB

brief description

detailed description (eg, help file information)

Required Flagged Arguments

-flag1 arg1

brief description

detailed description (eg, help file information)

-flag2 arg2

brief description

detailed description (eg, help file information)

Optional Flagged Arguments

-flag3 arg3

brief description

detailed description (eg, help file information)

-flag4 arg4

brief description

detailed description (eg, help file information)

Outputs

volume1

description

volume2

description

Description

description

Examples

Example 1

command foo -i f -o out

description

Example 2

command foo -i f -o out -f fvalue

description

Bugs

None

See Also

othercommand1, othercommand2

Links

FreeSurfer, FsFast

Methods Description

description
description

References

References/Lastname###

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Author/s

JaneSmith

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