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| Two scripts have been written, first one is '''''an applescript''' which works with both shell types '''''bash''' and '''tcsh''''' but it is suitable for '''''Mac OS X''' only. The other one is a '''(bash script)''' that works on Mac OS X and Linux. | Two scripts have been written, first one is '''applescript''' which works with both shell types '''bash''' and '''tcsh''' but it is suitable for '''Mac OS X''' only. The other one is a '''(bash script)''' that works on Mac OS X and Linux. |
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| Please click on the link below to download script; | Please click on the link below to download script: [[http://www.nitrc.org/frs/download.php/4342/Easy_Freesurfer.zip|Easy_Freesurfer]] [[attachment:easyfreesurfer_help.pdf]] [[http://www.youtube.com/watch?v=EY8beEgrhVk|The illustration video]] |
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| '''multi mri_convert''' | |
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| [[attachment:easyfreesurfer_help.pdf]] | Please click on the link below to download script: [[attachment:Multiple mri_convert.zip]] [[http://www.youtube.com/watch?v=c5EiDUTKOdI|The illustration video]] |
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| '''***********************************************************************************************************''' |
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| Please click on the link below to download script: | |
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| This script will be added soon! | [[http://www.nitrc.org/frs/download.php/4669/easyfreesurfer_bash.zip|Easy_Freesurfer_bash]] For using this script, which works on both Linux and MAC, user needs to copy this script to data directory and execute it from there. Bash script works on bash shell only where "chmod +x" command used to make it executable as following; chmod +x easyfreesurfer_bash.command or chmod +x easyfreesurfer_bash.sh |
Easyfreesurfer is a simple script which was written to simplify and automate most freesurfer processes. It controls some commands such as; recon-all and mri_convert without writing any command in terminal, hence user will only need to use mouse to select options and click buttons. Two scripts have been written, first one is applescript which works with both shell types bash and tcsh but it is suitable for Mac OS X only. The other one is a (bash script) that works on Mac OS X and Linux.
1- Applescript
Please click on the link below to download script:
easyfreesurfer_help.pdf The illustration video
multi mri_convert
Please click on the link below to download script:
Multiple mri_convert.zip The illustration video
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2- Bash script Please click on the link below to download script:
For using this script, which works on both Linux and MAC, user needs to copy this script to data directory and execute it from there. Bash script works on bash shell only where "chmod +x" command used to make it executable as following; chmod +x easyfreesurfer_bash.command or chmod +x easyfreesurfer_bash.sh