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| Easyfreesurfer is a simple script which was written to simplify and automate most freesurfer processes. It controls some commands such as; recon-all and mri_convert without writing any command in terminal, hence user will only need to use mouse to select options and click buttons. Two scripts have been written, one works on Mac OS X and Linux '''(bash script)'''. The other is an applescript which works with both shell types '''''bash'' and '''tcsh''''' but it is suitable for '''''Mac OS X'' only. | Easyfreesurfer is a simple script which was written to simplify and automate most freesurfer processes. It controls some commands such as; recon-all and mri_convert without writing any command in terminal, hence user will only need to use mouse to select options and click buttons. Two scripts have been written, first one is '''''an applescript''' which works with both shell types '''''bash''' and '''tcsh''''' but it is suitable for '''''Mac OS X''' only. The other one is a '''(bash script)''' that works on Mac OS X and Linux. '''1- Applescript''' Please click on the link below to download script; [[attachment:easyfreesurfer_help.pdf]] '''2- Bash script''' This script will be added soon! |
Easyfreesurfer is a simple script which was written to simplify and automate most freesurfer processes. It controls some commands such as; recon-all and mri_convert without writing any command in terminal, hence user will only need to use mouse to select options and click buttons. Two scripts have been written, first one is an applescript which works with both shell types bash and tcsh but it is suitable for Mac OS X only. The other one is a (bash script) that works on Mac OS X and Linux.
1- Applescript
Please click on the link below to download script;
2- Bash script
This script will be added soon!