Diff for "Easyfreesurfer" - Free Surfer Wiki

Differences between revisions 7 and 26 (spanning 19 versions)

Easyfreesurfer is a simple script which was written to simplify and automate most freesurfer processes. It controls some commands such as; recon-all and mri_convert without writing any command in terminal, hence user will only need to use mouse to select options and click buttons. Two scripts have been written, first one is applescript which works with both shell types bash and tcsh but it is suitable for Mac OS X only. The other one is a (bash script) that works on Mac OS X and Linux.

1- Applescript

Please click on the link below to download script:

Easy_Freesurfer

easyfreesurfer_help.pdf The illustration video

multi mri_convert

Please click on the link below to download script:

Multiple mri_convert.zip The illustration video

***********************************************************************************************************

2- Bash script

This script will be added soon!

-  ⇤ ← Revision 7 as of 2011-07-10 14:16:53 → 
  Size: 617
  Editor: 2
  Comment:
+   ← Revision 26 as of 2012-02-17 14:23:21 → ⇥
  Size: 1181
  Editor: 2
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 2:
-Two scripts have been written, one works on Mac OS X and Linux  '''(bash script)'''. The other is an applescript which works with both shell types '''''bash''' and '''tcsh''''' but it is suitable for '''''Mac OS X''  only.
+Two scripts have been written, first one is '''applescript''' which works with both shell types '''bash''' and '''tcsh''' but it is suitable for '''Mac OS X''' only. The other one is a '''(bash script)''' that works on Mac OS X and Linux.
 Line 5:
-Please click on the link below to download script;
[[attachment:Easy freesurfer]]
+Please click on the link below to download script:

[[http://www.nitrc.org/frs/download.php/4342/Easy_Freesurfer.zip|Easy_Freesurfer]]

[[attachment:easyfreesurfer_help.pdf]]
[[http://www.youtube.com/watch?v=EY8beEgrhVk|The illustration video]]


    '''multi mri_convert'''

Please click on the link below to download script:

[[attachment:Multiple mri_convert.zip]]
[[http://www.youtube.com/watch?v=c5EiDUTKOdI|The illustration video]]


'''***********************************************************************************************************'''

'''2- Bash script'''

This script will be added soon!