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| see [[http://www.fmrib.ox.ac.uk/fsl/|FSL]] |
The FSL software is fMRI and DTI analysis software from Oxford University. See [[http://www.fmrib.ox.ac.uk/fsl/|FSL]]. The software is installed locally at the NMR center in {{{/usr/pubsw/packages/fsl}}}. The most current locally tested version is always symlinked through the 'current' link. When FreeSurfer is setup (via {{{source /usr/local/freesurfer/nmr-stable51-env}}} it will also setup the FSL version linked to 'current'. To override the version setup by FreeSurfer, first find the FSL version number you want in the {{{/usr/pubsw/packages/fsl}}} directory, for example, v5.0.0, then type this (using the 5.0.0 as the example) prior to sourcing the freesurfer setup: {{{ setenv FSL_DIR /usr/pubsw/packages/fsl/5.0.0}}} source /usr/local/freesurfer/nmr-stable51-env }}} |
The FSL software is fMRI and DTI analysis software from Oxford University. See FSL.
The software is installed locally at the NMR center in /usr/pubsw/packages/fsl. The most current locally tested version is always symlinked through the 'current' link.
When FreeSurfer is setup (via source /usr/local/freesurfer/nmr-stable51-env it will also setup the FSL version linked to 'current'.
To override the version setup by FreeSurfer, first find the FSL version number you want in the /usr/pubsw/packages/fsl directory, for example, v5.0.0, then type this (using the 5.0.0 as the example) prior to sourcing the freesurfer setup:
setenv FSL_DIR /usr/pubsw/packages/fsl/5.0.0
source /usr/local/freesurfer/nmr-stable51-env }}}