Differences between revisions 10 and 14 (spanning 4 versions)

FreeSurfer File Formats

FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats.

1.0 FreeSurfer Native Formats

1.1 Volume BR

[wiki:FsTutorial/CorFormat COR] BR
[wiki:FsTutorial/BshortFormat bshort] BR
[wiki:FsTutorial/BfloatFormat bfloat] BR
[wiki:FsTutorial/MghFormat mgh/mgz] BR
gca

1.2 Surface BR

[http://wideman-one.com/gw/brain/fs/surfacefileformats.htm FreeSurfer Surface File Formats]

1.3 Transform BR

2.0 External Formats

[wiki:FsTutorial/MincFormat MINC] BR
[wiki:FsTutorial/AnalyzeFormat Analyze] BR
[wiki:FsTutorial/DicomFormat DICOM] BR
See also: [http://airto.bmap.ucla.edu/BMCweb/HowTo/FileFormats.html Image file formats] BR

-  ⇤ ← Revision 10 as of 2004-08-09 13:01:02 → 
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  Comment: changed index formatting
+   ← Revision 14 as of 2006-01-16 20:53:36 → ⇥
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  Editor: NickSchmansky
  Comment: added mgh/mgz format page
-Deletions are marked like this.
+Additions are marked like this.
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-#pragma section-numbers on
+[wiki:Self:FreeSurferWiki top]
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-[[Navigation(children)]]
+= FreeSurfer File Formats =
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-'''Index'''
+FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats.
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-[[TableOfContents]]
+== 1.0 FreeSurfer Native Formats ==
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-= FreeSurfer Native Formats =
== Volume ==
 * mgh
+'''1.1 Volume''' [[BR]]

 * [wiki:Self:FsTutorial/CorFormat COR] [[BR]]
 * [wiki:Self:FsTutorial/BshortFormat bshort] [[BR]]
 * [wiki:Self:FsTutorial/BfloatFormat bfloat] [[BR]]
 * [wiki:Self:FsTutorial/MghFormat mgh/mgz] [[BR]]
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- * bfloat
 * bshort
 * COR
+'''1.2 Surface''' [[BR]]
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-== Surface ==
+ * [http://wideman-one.com/gw/brain/fs/surfacefileformats.htm FreeSurfer Surface File Formats]
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+Line 21:
- * surface (ascii/binary)
 * curv
 * w
 * annot
 * patch
 * gcs
+'''1.3 Transform''' [[BR]]
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+Line 23:
-== Transforms ==
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+== 2.0 External Formats ==
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-= FreeSurfer Dependency Formats =
== Volume ==
 * ["MINC"]
 * Analyze
 * ["DICOM"]
+ * [wiki:Self:FsTutorial/MincFormat MINC] [[BR]]
 * [wiki:Self:FsTutorial/AnalyzeFormat Analyze] [[BR]]
 * [wiki:Self:FsTutorial/DicomFormat DICOM] [[BR]]
 * See also: [http://airto.bmap.ucla.edu/BMCweb/HowTo/FileFormats.html Image file formats] [[BR]]