Diff for "FileFormats" - Free Surfer Wiki

Differences between revisions 2 and 11 (spanning 9 versions)

FreeSurfer File Formats

FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats.

1.0 FreeSurfer Native Formats

1.1 Volume BR

[wiki:FsTutorial/CorFormat COR] BR
[wiki:FsTutorial/BshortFormat bshort] BR
[wiki:FsTutorial/BfloatFormat bfloat] BR
mgh
mgz
gca

1.2 Surface BR

[http://wideman-one.com/gw/brain/fs/surfacefileformats.htm FreeSurfer Surface File Formats]

1.3 Transform BR

2.0 External Formats

[wiki:FsTutorial/MincFormat MINC] BR
[wiki:FsTutorial/AnalyzeFormat Analyze] BR
[wiki:FsTutorial/DicomFormat DICOM] BR

-  ⇤ ← Revision 2 as of 2004-07-30 11:21:00 → 
  Size: 335
  Editor: DavidTuch
  Comment: Added DICOM information and medical image format FAQ.
+   ← Revision 11 as of 2005-08-15 13:32:53 → ⇥
  Size: 1029
  Editor: anonymous
  Comment: missing edit-log entry for this revision
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
-= FreeSurfer file formats =
 * bfloat
 * bshort
 * COR
+[wiki:Self:FreeSurferWiki top]
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+Line 3:
- * label
 * surf
+== FreeSurfer File Formats ==
-Line 9:
+Line 5:
-= Medical Image Format FAQ =
http://www.dclunie.com/medical-image-faq/html
+FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats.
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+Line 7:
-= DICOM Information =
[http://medical.nema.org/dicom/2003.html DICOM specification] [[BR]]
[http://dclunie.com/medical-image-faq/html/part8.html DICOM informtion sources]
+=== 1.0 FreeSurfer Native Formats ===

'''1.1 Volume''' [[BR]]

 * [wiki:Self:FsTutorial/CorFormat COR] [[BR]]
 * [wiki:Self:FsTutorial/BshortFormat bshort] [[BR]]
 * [wiki:Self:FsTutorial/BfloatFormat bfloat] [[BR]]
 * mgh
 * mgz
 * gca

'''1.2 Surface''' [[BR]]

 * [http://wideman-one.com/gw/brain/fs/surfacefileformats.htm FreeSurfer Surface File Formats]

'''1.3 Transform''' [[BR]]

 * dat
 * xfm
 * m3d
 * lta

=== 2.0 External Formats ===

 * [wiki:Self:FsTutorial/MincFormat MINC] [[BR]]
 * [wiki:Self:FsTutorial/AnalyzeFormat Analyze] [[BR]]
 * [wiki:Self:FsTutorial/DicomFormat DICOM] [[BR]]