Differences between revisions 9 and 12 (spanning 3 versions)

FreeSurfer File Formats

FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats.

1.0 FreeSurfer Native Formats

1.1 Volume BR

[wiki:FsTutorial/CorFormat COR] BR
[wiki:FsTutorial/BshortFormat bshort] BR
[wiki:FsTutorial/BfloatFormat bfloat] BR
mgh
mgz
gca

1.2 Surface BR

[http://wideman-one.com/gw/brain/fs/surfacefileformats.htm FreeSurfer Surface File Formats]

1.3 Transform BR

2.0 External Formats

[wiki:FsTutorial/MincFormat MINC] BR
[wiki:FsTutorial/AnalyzeFormat Analyze] BR
[wiki:FsTutorial/DicomFormat DICOM] BR

-  ⇤ ← Revision 9 as of 2004-08-03 16:49:34 → 
  Size: 418
  Editor: DavidTuch
  Comment: Added MINC link.
+   ← Revision 12 as of 2005-08-15 13:35:16 → ⇥
  Size: 1023
  Editor: NickSchmansky
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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-#pragma section-numbers on
+[wiki:Self:FreeSurferWiki top]
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-[[Navigation(children)]]
+= FreeSurfer File Formats =
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-= Index =
[[TableOfContents]]
+FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz, gca, bshort, bfloat, COR, surface, curv, w, annot, patch, gcs, dat, xfm, m3d and lta. These FreeSurfer native formats are summarized below, along with some closely-related external image formats.
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-= FreeSurfer Native Formats =
== Volume ==
+== 1.0 FreeSurfer Native Formats ==

'''1.1 Volume''' [[BR]]

 * [wiki:Self:FsTutorial/CorFormat COR] [[BR]]
 * [wiki:Self:FsTutorial/BshortFormat bshort] [[BR]]
 * [wiki:Self:FsTutorial/BfloatFormat bfloat] [[BR]]
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+Line 15:
+ * mgz
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+Line 18:
- * bfloat
 * bshort
 * COR
+'''1.2 Surface''' [[BR]]
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+Line 20:
-== Surface ==
+ * [http://wideman-one.com/gw/brain/fs/surfacefileformats.htm FreeSurfer Surface File Formats]
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+Line 22:
- * surface (ascii/binary)
 * curv
 * w
 * annot
 * patch
 * gcs
+'''1.3 Transform''' [[BR]]
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+Line 24:
-== Transforms ==
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+Line 29:
+== 2.0 External Formats ==
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+Line 31:
-= FreeSurfer Dependency Formats =
== Volume ==
 * ["MINC"]
 * Analyze
 * ["DICOM"]
+ * [wiki:Self:FsTutorial/MincFormat MINC] [[BR]]
 * [wiki:Self:FsTutorial/AnalyzeFormat Analyze] [[BR]]
 * [wiki:Self:FsTutorial/DicomFormat DICOM] [[BR]]