Results 101 - 125 of 362 results out of about 3772 pages. (1.20 seconds)
- BasicReconstruction . . . 7 matches
- ...[[FreeSurferWorkFlows|top]] | [[FreeSurferWorkFlows|previous]] | [[RecommendedReconstruction|next]]
This workflow completes the entire reconstruction process without stopping. Se...
- tksurfer . . . 6 matches
- ...bert lh inflated}}}
= See Also =
TkSurferGuide
= Author/s =
KevinTeich
= Links =
FreeSurfer, TkSurfer
= Description =
TkSurfer is the surface viewer for FreeSurfer. Use it to...
- mri_glmfit . . . 6 matches
- ...r dir ||save outputs to dir ||
|| ||
||--y inputfile || ||
||--fsgd FSGDF <gd2mtx> ||freesurfer descriptor file ||
||--X design matrix file || ||
||--C contrast1.mat <--C contrast2...
- infantFS . . . 6 matches
- ...__'''DOWNLOAD'''__
'''Code''': Click [[https://lcn.martinos.org/infant-freesurfer-request/|here]] to request.
We have an experimental docker release image as well, s...
- fcseed-sess . . . 6 matches
- ...ectdir ||
== Optional Flagged Arguments ==
||-seg segid <-segid segid2 ...> ||use FreeSurfer segmentation as seed || use FreeSurfer Segmentation IDs for common ROIs (found in $F...
- WorkFlows . . . 6 matches
- ...[[FreeSurferWiki|top]] | [[FreeSurferWorkFlows|next]]
= WorkFlows =
The FreeSurfer tools, and brain image processing tools in general, are best understood in the context of a wor...
- ThirdPartySoftware . . . 6 matches
- ...[http://nipy.sourceforge.net/nipype/index.html|Nipype]] - Neuroimaging in Python, w/ FreeSurfer interfaces
* [[http://mindboggle.info/data.html|Mindboggle-101 data]] - Manually la...
- SynthSeg . . . 6 matches
- ...= SynthSeg =
'''''This functionality is now available in FreeSurfer (v7.3.2 onwards)'''''
<<BR>>
<<BR>>
<<BR>>
'''''Update September 2022: SynthSeg is also available as part of Ma...
- RcbfProc . . . 6 matches
- ...) data produced by the Siemens scanner using their pulsed ASL (PASL) protocol in the FreeSurfer environment, including registration and group analysis. This is sequence is usually ...
- HistoAtlasSegmentation . . . 6 matches
- ...ogical Atlas "NextBrain" =
'''''To use this functionality before the next version of FreeSurfer comes out, please install the latest stable version of FreeSurfer (7.4.1), download ...
- FslWorkFlows . . . 6 matches
- ...[[FreeSurferWiki|top]] | [[WorkFlows|previous]]
= FreeSurfer - FSL - FEAT Work Flows =
FslWorkFlows describes processing workflows for applying FreeSurfer tools to FSL fMRI analy...
- FsTutorial/VolumetricGroupAnalysis . . . 6 matches
- ...[[FsTutorial|top]] | [[FsTutorial|previous]] | [[FsTutorial|next]]
= FreeSurfer Tutorial: Volumetric Group Analysis =
* If you are taking one of the formally organized courses, th...
- FsTutorial/QuestionAnswersApril2013 . . . 6 matches
- ...== This wiki page contains the students questions and answers from the April 29 2013 Freesurfer course. ==
[[https://surfer.nmr.mgh.harvard.edu/cgi-bin/fsurfer/internal/questionsl...
- FsFastTutorialV6.0/TutorialData . . . 6 matches
- ...as 1 run (except sess01 which has 4 runs)
* Collected at MGH Bay 4 (3T Siemens)
* !FreeSurfer anatomical analyses
= Functional Paradigm =
The paradigm was designed to study the ...
- FsFastTutorialV5.1/TutorialData_freeview . . . 6 matches
- ...has 1 run (except sess01 which has 4 runs)
* Collected at MGH Bay 4 (3T Siemens)
* FreeSurfer anatomical analyses
= Functional Paradigm =
The paradigm was designed to study the e...
- sbTIV . . . 5 matches
- ...ippocampal volume size). The gold-standard method is manual delineation of T2 scans. Freesurfer currently provides the eTIV measure, described [[eTIV| here]]. It has been shown to ...
- regdat2xfm . . . 5 matches
- ...(children)>>
'''Index'''
<<TableOfContents>>
= Name =
regdat2xfm - produces the MNI/Freesurfer compatible xfm which can be used for freesurfer
= Synopsis =
regdat2xfm srcvol targ...
- mri_robust_template . . . 5 matches
- ...subject template in the [[LongitudinalProcessing | longitudinal stream ]] (-base) in FreeSurfer.
Important Note: For best performance the input images should all have
the same in...
- ToolsTutorial . . . 5 matches
- ...'''Index'''
<<TableOfContents>>
= FreeSurfer Tools Tutorial =
The tutorial below is meant to introduce you to several tools that are used by the !FreeSurfer Development team.
To ...
- SubcorticalSegmentation . . . 5 matches
- ...[[FreeSurferWorkFlows|top]]
= Subcortical Segmentation =
In automatic subcortical segmentation, each voxel in the normalized brain volume is assigned one of about 40 labels, incl...
- RecommendedReconstruction . . . 5 matches
- ...
[[FreeSurferWorkFlows|top]] | [[BasicReconstruction|previous]] | [[HistoricalReconstruction|next]]
Although the reconstruction process is broken down into three different stages,...
- MiDeFace . . . 5 matches
- ...
'''mideface - a FreeSurfer tool for Minimally Invasive DeFacing of MRI images'''
Note: a bug was found in the 7.4.0 version of MiDeFace when creating the head mask and true face ...
- FsTutorial/CourseHistory . . . 5 matches
- ...ocation''' ||'''type''' ||'''attendees''' || '''auditors'''||
||81 ||2023 ||June || !FreeSurfer Virtual Course||virtual fs ||32 ||4 ||
||80 ||2022 ||Sept || !FreeSurfer Virtual Cou...
- FsFastTutorialV5.1/TutorialData . . . 5 matches
- ...has 1 run (except sess01 which has 4 runs)
* Collected at MGH Bay 4 (3T Siemens)
* FreeSurfer anatomical analyses
= Functional Paradigm =
The paradigm was designed to study the ...
- FsFastTutorialV5.1/FsFastPreProc_freeview . . . 5 matches
- ...essing includes
1. Template Creation
1. Brain Mask Creation
1. Registration with FreeSurfer Anatomical
1. Motion Correction
1. Slice Timing Correction (if using)
1. Spatial ...