Results 126 - 150 of 362 results out of about 3772 pages. (1.17 seconds)
- FsFastTutorialV5.1/FsFastPreProc . . . 5 matches
- ...essing includes
1. Template Creation
1. Brain Mask Creation
1. Registration with FreeSurfer Anatomical
1. Motion Correction
1. Slice Timing Correction (if using)
1. Spatial ...
- FsFastRegisterToStructural . . . 5 matches
- ...e) transformation matrix to map between the individual's functional data and his/her FreeSurfer structural/anatomical data (namely, the orig.mgz volume in the FreeSurfer mri direct...
- FsAnat-to-NativeAnat . . . 5 matches
- ...= How to Convert from FreeSurfer Space Back to Native Anatomical Space =
== Regular Stream ==
For the longitudinal stream, scroll down.
Question: I have successfully run a subje...
- FSL . . . 5 matches
- ...rrent locally tested version is always symlinked through the 'current' link.
When FreeSurfer is setup (via {{{source /usr/local/freesurfer/nmr-stable51-env}}} it will also setup...
- DraftChallenges . . . 5 matches
- ...[[Contour|Contour]]
[[Introduction to FreeSurfer Output DRAFT]]
= Introduction to FreeSurfer Output =
=== Exercise 1 ===
'''Difficulty:''' Beginner
'''Goal:''' Practice basic Fr...
- BrainmapOntology_Yeo2015 . . . 5 matches
- ...
[[FreeSurferWiki|top]]
= Nested Cognitive Ontology Estimated From 10,449 Experiments =
||We applied a hierarchical Bayesian model (figure on right) on 10,449 Brainmap experiment...
- trac-all-full . . . 4 matches
- ... cortical and whole-brain masks - Generate masks of the white matter and cortex from FreeSurfer outputs, whole-brain masks from T1 and DWIs.
||-masks ||to do this step (Default) ||...
- mris_label2annot . . . 4 matches
- ...es, their indices, and their color. This must have the same format as that found in $FREESURFER_HOME/FreeSurferColorLUT.txt. <<BR>>The colortable file gets incorporated into the ou...
- mri_surf2vol . . . 4 matches
- ...ame. Not needed with --merge. See FORMATS below. ||
||--fstal res || Sets volreg to $FREESURFER_HOME/average/mni305.cor.subfov$res.reg and template to $FREESURFER_HOME/average/mni3...
- mri_surf2surf . . . 4 matches
- ...rguments ==
|| --src_type <typestring> ||Format type string||Can be either curv (for FreeSurfer curvature file), paint or w (for FreeSurfer paint files), or anything accepted by mr...
- UserContributions . . . 4 matches
- ...Please add a link to a wiki page or website that describes your contribution to !FreeSurfer.
=== Categories ===
* [[/Scripts|Scripts]] - Tcl, Python and shell scripts for all Fre...
- TemplateTifImageFiles . . . 4 matches
- ...ss =
This page describes technical aspects of the "template" file type used in the !FreeSurfer pipeline as part of the process of coregistering the surfaces of individual subjects...
- SurfaceLabelAtlas . . . 4 matches
- ...
= Overview =
This document provides an overview of two related topics:
* How the !FreeSurfer pipeline automatically labels a subject's regions (producing an annotation file) by ...
- ScubaGuide/ScubaGeneralUsage/ScubaQuickStart . . . 4 matches
- ...y typing {{{scuba}}} on the command line. Make sure to have the environment variable FREESURFER_HOME set to a freesurfer installation that includes scuba (FreeSurferDev).
== Loadi...
- ScubaGuide/GUI . . . 4 matches
- ...y typing {{{scuba}}} on the command line. Make sure to have the environment variable FREESURFER_HOME set to a freesurfer installation that includes scuba (FreeSurferDev).
== Loadi...
- Perirhinal . . . 4 matches
- ...oundaries) while the standard 1mm scan provided the surface template that works with FreeSurfer. This perirhinal label was validated with histological staining and thus cytoarchite...
- MonkeyData . . . 4 matches
- ...== Monkey Data And FreeSurfer ==
This page contains notes on how to process monkey data using Freesurfer.
----
For starters, Sebastian Moeller has provided [[attachment:myscripts...
- MiDeFace2 . . . 4 matches
- ...'''mideface - a FreeSurfer tool for Minimally Invasive DeFacing of MRI images'''
<<TableOfContents>>
== Introduction ==
MRI images of the brain inevitably include the head and so t...
- HeritabilityAnalysis_Ge2015 . . . 4 matches
- ...ity-Analysis-(2015).aspx
----
<<BR>>
<<BR>>
<<BR>>
## HeritabilityAnalysis_Ge2015
[[FreeSurferWiki|top]]
= Heritability Maps of Cortical Structure Estimated with MEGHA =
We are ...
- HelpOnCommandTemplate . . . 4 matches
- ...format helps maintain a consistent style specification across all of the commands in FreeSurfer.
(To actually ''use'' a template to create a new page, see comments at bottom. -- ...
- FsTutorial/MultiModalRegistration_tktools . . . 4 matches
- ...s to get you acquainted with the concepts need to perform multi-modal integration in FreeSurfer using fMRI and DTI analysis. You will not learn how to perform fMRI or DTI analysis ...
- FsTutorial/MultiModalFmriGroup_tktools . . . 4 matches
- ...orial is to get you acquainted with the
concepts need to perform fMRI integration in FreeSurfer by interacting
with the data from several subjects in a group analysis. You will not...
- FsFastTutorialV5.1/FsFastDirStruct_freeview . . . 4 matches
- ...irectory structure and raw data are usually created by "unpacking" the data with the FreeSurfer dcmunpack or unpacksdcmdir programs, but it could also be done by hand. The subjectn...
- FsFastTutorialV5.1/FsFastDirStruct . . . 4 matches
- ...irectory structure and raw data are usually created by "unpacking" the data with the FreeSurfer dcmunpack or unpacksdcmdir programs, but it could also be done by hand. The subjectn...
- FsFastAnlysisBySteps . . . 4 matches
- ...[[FreeSurferWiki|top]]
'''# Unpack Data into the FSFAST Hierarchy using "unpackscmdir"'''
1. QA Check after unpacking
* '''A''' - Check unpacked data (t...