Differences between revisions 1 and 2
Deletions are marked like this. Additions are marked like this.
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  * Brik2Bfloat brik2bfloat
  * MincToBshort minc_to_bshort
  * MkXsubjReg mkxsubjreg
  * MriAddXformToHeader mri_add_xform_to_header
  * MriAnnotation2Label mri_annotation2label
  * MriAverage mri_average
  * MriCaLabel mri_ca_label
  * MriCaNormalize mri_ca_normalize
  * MriCaRegister mri_ca_register
  * MriCaTrain mri_ca_train
  * MriConvert mri_convert
  * MriConvertMdh mri_convert_mdh
  * MriCor2Label mri_cor2label
  * MriEmRegister mri_em_register
  * MriFill mri_fill
  * MriGdfGlm mri_gdfglm
  * MriHead mri_head
  * MriInfo mri_info
  * MriLabel2Label mri_label2label
  * MriLabelVolume mri_label_volume
  * MriLinearRegister mri_linear_register
  * MriMakeRegister mri_make_register
  * MriMakeTemplate mri_make_template
  * MriMatrixMultiple mri_matrix_multiply
  * MriMsFitParms mri_ms_fitparms
  * MriNormalize mri_normalize
  * MriParseSdcmDir mri_parse_sdcmdir
  * MriPartialRibbon mri_partial_ribbon
  * MriProbdeDicom mri_probedicom
  * MriProbeIma mri_probe_ima
  * MriRegister mri_register
  * MriRelabelHypointensities mri_relabel_hypointensities
  * MriRigidRegister mri_rigid_register
  * MriSegHead mri_seghead
  * MriSegment mri_segment
  * MriStripSkull mri_strip_skull
  * MriSurf2Surf mri_surf2surf
  * MriSurf2Vol mri_surf2vol
  * MriSurfCluster mri_surfcluster
  * MriTessellate mri_tessellate
  * MriVol2Roi mri_vol2roi
  * MriVol2Surf mri_vol2surf
  * MriVolCluster mri_volcluster
  * MriVolSynth mri_volsynth
  * MriWmFilter mri_wmfilter
  * MriWatershed mri_watershed
  * MriXvolAvg mri_xvolavg
  * Mris2Rgb mris2rgb
  * MrisAnatomicalStats mris_anatomical_stats
  * MrisAverageCurvature mris_average_curvature
  * MrisCaLabel mris_ca_label
  * MrisCaTrain mris_ca_train
  * MrisConvert mris_convert
  * MrisCurvature mris_curvature
  * MrisEulerNumber mris_euler_number
  * MrisFindFlatRegions mris_find_flat_regions
  * MrisFixTopology mris_fix_topology
  * MrisFlatten mris_flatten
  * MrisGlm mris_glm
  * MrisInflate mris_inflate
  * MrisMakeAvergeSurface mris_make_average_surface
  * MrisMakeSurfaces mris_make_surfaces
  * MrisMakeTemplate mris_make_template
  * MrisRegister mris_register
  * MrisSmooth mris_smooth
  * MrisSphere mris_sphere
  * MrisSphericalAverage mris_spherical_average
  * MrisThickness mris_thickness
  * MrisTwoClass mris_twoclass
  * MrispPaint mrisp_paint
  * MriSynthesize mri_synthesize
  * NMovie nmovie
  * OptSeq2 optseq2
  * Paint paint
  * Spm2Bfloat spm2bfloat
  * StatCombine statcombine
  * StatNormalize stat_normalize
  * VssDump vss-dump
["brik2bfloat"] [[BR]]
["minc_to_bshort"] [[BR]]
["mkxsubjreg"] [[BR]]
["mri_add_xform_to_header"] [[BR]]
["mri_annotation2label"] [[BR]]
["mri_average"] [[BR]]
["mri_ca_label"] [[BR]]
["mri_ca_normalize"] [[BR]]
["mri_ca_register"] [[BR]]
["mri_ca_train"] [[BR]]
["mri_convert"] [[BR]]
["mri_convert_mdh"] [[BR]]
["mri_cor2label"] [[BR]]
["mri_em_register"] [[BR]]
["mri_fill"] [[BR]]
["mri_gdfglm"] [[BR]]
["mri_head"] [[BR]]
["mri_info"] [[BR]]
["mri_label2label"] [[BR]]
["mri_label_volume"] [[BR]]
["mri_linear_register"] [[BR]]
["mri_make_register"] [[BR]]
["mri_make_template"] [[BR]]
["mri_matrix_multiply"] [[BR]]
["mri_ms_fitparms"] [[BR]]
["mri_normalize"] [[BR]]
["mri_parse_sdcmdir"] [[BR]]
["mri_partial_ribbon"] [[BR]]
["mri_probedicom"] [[BR]]
["mri_probe_ima"] [[BR]]
["mri_register"] [[BR]]
["mri_relabel_hypointensities"] [[BR]]
["mri_rigid_register"] [[BR]]
["mri_seghead"] [[BR]]
["mri_segment"] [[BR]]
["mri_strip_skull"] [[BR]]
["mri_surf2surf"] [[BR]]
["mri_surf2vol"] [[BR]]
["mri_surfcluster"] [[BR]]
["mri_tessellate"] [[BR]]
["mri_vol2roi"] [[BR]]
["mri_vol2surf"] [[BR]]
["mri_volcluster"] [[BR]]
["mri_volsynth"] [[BR]]
["mri_wmfilter"] [[BR]]
["mri_watershed"] [[BR]]
["mri_xvolavg"] [[BR]]
["mris2rgb"] [[BR]]
["mris_anatomical_statsv"] [[BR]]
["mris_average_curvature"] [[BR]]
["mris_ca_label"] [[BR]]
["mris_ca_train"] [[BR]]
["mris_convert"] [[BR]]
["mris_curvature"] [[BR]]
["mris_euler_number"] [[BR]]
["mris_find_flat_regions"] [[BR]]
["mris_fix_topology"] [[BR]]
["mris_flatten"] [[BR]]
["mris_glm"] [[BR]]
["mris_inflate"] [[BR]]
["mris_make_average_surface"] [[BR]]
["mris_make_surfaces"] [[BR]]
["mris_make_template"] [[BR]]
["mris_register"] [[BR]]
["mris_smooth"] [[BR]]
["mris_sphere"] [[BR]]
["mris_spherical_average"] [[BR]]
["mris_thickness"] [[BR]]
["mris_twoclass"] [[BR]]
["mrisp_paint"] [[BR]]
["mri_synthesize"] [[BR]]
["nmovie"] [[BR]]
["optseq2"] [[BR]]
["paint"] [[BR]]
["spm2bfloat"] [[BR]]
["stat_normalize"] [[BR]]
["vss-dump"] [[BR]]

["brik2bfloat"] BR ["minc_to_bshort"] BR ["mkxsubjreg"] BR ["mri_add_xform_to_header"] BR ["mri_annotation2label"] BR ["mri_average"] BR ["mri_ca_label"] BR ["mri_ca_normalize"] BR ["mri_ca_register"] BR ["mri_ca_train"] BR ["mri_convert"] BR ["mri_convert_mdh"] BR ["mri_cor2label"] BR ["mri_em_register"] BR ["mri_fill"] BR ["mri_gdfglm"] BR ["mri_head"] BR ["mri_info"] BR ["mri_label2label"] BR ["mri_label_volume"] BR ["mri_linear_register"] BR ["mri_make_register"] BR ["mri_make_template"] BR ["mri_matrix_multiply"] BR ["mri_ms_fitparms"] BR ["mri_normalize"] BR ["mri_parse_sdcmdir"] BR ["mri_partial_ribbon"] BR ["mri_probedicom"] BR ["mri_probe_ima"] BR ["mri_register"] BR ["mri_relabel_hypointensities"] BR ["mri_rigid_register"] BR ["mri_seghead"] BR ["mri_segment"] BR ["mri_strip_skull"] BR ["mri_surf2surf"] BR ["mri_surf2vol"] BR ["mri_surfcluster"] BR ["mri_tessellate"] BR ["mri_vol2roi"] BR ["mri_vol2surf"] BR ["mri_volcluster"] BR ["mri_volsynth"] BR ["mri_wmfilter"] BR ["mri_watershed"] BR ["mri_xvolavg"] BR ["mris2rgb"] BR ["mris_anatomical_statsv"] BR ["mris_average_curvature"] BR ["mris_ca_label"] BR ["mris_ca_train"] BR ["mris_convert"] BR ["mris_curvature"] BR ["mris_euler_number"] BR ["mris_find_flat_regions"] BR ["mris_fix_topology"] BR ["mris_flatten"] BR ["mris_glm"] BR ["mris_inflate"] BR ["mris_make_average_surface"] BR ["mris_make_surfaces"] BR ["mris_make_template"] BR ["mris_register"] BR ["mris_smooth"] BR ["mris_sphere"] BR ["mris_spherical_average"] BR ["mris_thickness"] BR ["mris_twoclass"] BR ["mrisp_paint"] BR ["mri_synthesize"] BR ["nmovie"] BR ["optseq2"] BR ["paint"] BR ["spm2bfloat"] BR ["stat_normalize"] BR ["vss-dump"] BR

FreeSurferCommands (last edited 2011-09-19 15:19:48 by MartinReuter)