| Deletions are marked like this. | Additions are marked like this. |
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* Commands, in chronological order: * ["mri_convert"] * ["mri_motion_correct.fsl"] * ["mri_nu_correct.mni"] * ["talairach"] * ["mri_normalize"] * ["mri_watershed"] * ["mri_em_register"] * ["mri_ca_normalize"] * ["mri_ca_register"] * ["mri_remove_neck"] * ["mri_ca_label"] * ["mri_segstats"] * ["mri_mask"] * ["mri_segment"] * ["mri_edit_wm_with_aseg"] * ["mri_pretess"] * ["mri_fill"] * ["mri_tessellate"] * ["mris_smooth"] * ["mris_inflate"] * ["mris_sphere"] * ["mris_fix_topology"] * ["mris_make_surfaces"] * ["mris_surf2vol"] * ["mris_register"] * ["mrisp_paint"] * ["mris_ca_label"] * ["mris_anatomical_stats"] * ["mri_aparc2aseg"] |
Include(Blank, "Recon-all", 4)
- ["recon-all"]
- Commands, in chronological order:
- ["mri_convert"]
- ["mri_motion_correct.fsl"]
- ["mri_nu_correct.mni"]
- ["talairach"]
- ["mri_normalize"]
- ["mri_watershed"]
- ["mri_em_register"]
- ["mri_ca_normalize"]
- ["mri_ca_register"]
- ["mri_remove_neck"]
- ["mri_ca_label"]
- ["mri_segstats"]
- ["mri_mask"]
- ["mri_segment"]
- ["mri_edit_wm_with_aseg"]
- ["mri_pretess"]
- ["mri_fill"]
- ["mri_tessellate"]
- ["mris_smooth"]
- ["mris_inflate"]
- ["mris_sphere"]
- ["mris_fix_topology"]
- ["mris_make_surfaces"]
- ["mris_surf2vol"]
- ["mris_register"]
- ["mrisp_paint"]
- ["mris_ca_label"]
- ["mris_anatomical_stats"]
- ["mri_aparc2aseg"]
Include(FreeSurferCommandsVolumeConversion, , 5) Include(FreeSurferCommandsMotionCorrection, , 5) Include(FreeSurferCommandsTalairach, ,5) Include(FreeSurferCommandsRegistration, ,5) Include(FreeSurferCommandsIntensityNormalization, ,5) Include(FreeSurferCommandsSkullStripping, ,5) Include(FreeSurferCommandsSegmentation, ,5) Include(FreeSurferCommandsVolumeMisc, ,5)
Include(FreeSurferCommandsSurfaceGeneration, ,5) Include(FreeSurferCommandsSurfaceSmoothing, ,5) Include(FreeSurferCommandsSurfaceInflation, ,5) Include(FreeSurferCommandsTopologyFixing, ,5) Include(FreeSurferCommandsInterSubjectMorphing, ,5) Include(FreeSurferCommandsFinalSurfaceGeneration, ,5) Include(FreeSurferCommandsSurfaceParcellation, ,5) Include(FreeSurferCommandsFlattening, ,5) Include(FreeSurferCommandsSurfaceMisc, ,5)