Index
1. Volume
1.1. VolumeConversion
["mri_convert"] BR ["brik2bfloat"] BR ["minc_to_bshort"] BR ["mri_annotation2label"] BR ["mri_convert_mdh"] BR ["mri_cor2label"] BR ["mri_label2label"] BR ["mri_label2vol"] BR ["mri_surf2surf"] BR ["mri_surf2vol"] BR ["mri_vol2roi"] BR ["mri_vol2surf"] BR ["mri_volcluster"] BR ["spm2bfloat"] BR
1.2. MotionCorrection
["mri_motion_correct"] BR
1.3. Talairach
["talairach"] BR ["talairach_mgh"] BR
1.4. Registration
["mri_ca_register"] BR ["mri_register"] BR ["mri_rigid_register"] BR ["mri_linear_register"] BR
Anchor(IntensityNormalization)
1.5. IntensityNormalization
["mri_normalize"] BR
1.6. SkullStripping
["mri_watershed"]
1.7. Segmentation
["mri_segment"] BR
1.8. VolumeMisc
["mkxsubjreg"] BR ["mri_add_xform_to_header"] BR ["mri_average"] BR ["mri_ca_label"] BR ["mri_ca_normalize"] BR ["mri_ca_train"] BR ["mri_em_register"] BR ["mri_fill"] BR ["mri_gdfglm"] BR ["mri_head"] BR ["mri_info"] BR ["mri_label_volume"] BR ["mri_make_register"] BR ["mri_make_template"] BR ["mri_matrix_multiply"] BR ["mri_ms_fitparms"] BR ["mri_parse_sdcmdir"] BR ["mri_partial_ribbon"] BR ["mri_probedicom"] BR ["mri_probe_ima"] BR ["mri_relabel_hypointensities"] BR ["mri_seghead"] BR ["mri_strip_skull"] BR ["mri_surfcluster"] BR ["mri_tessellate"] BR ["mri_volsynth"] BR ["mri_wmfilter"] BR ["mri_watershed"] BR ["mri_xvolavg"] BR
2. Surface
2.1. SurfaceGeneration
["mri_tessellate"] BR
2.2. Smoothing
["mris_smooth"] BR
2.3. Inflation
["mris_inflate"] BR
2.4. TopologyFixing
["mris_fix_topology"] BR
2.5. InterSubjectMorphing
["mris_sphere"] BR ["mris_register"] BR
Anchor(FinalSurfaceGeneration)
2.6. FinalSurfaceGeneration
["mris_make_surfaces"] BR
2.7. Parcellation
["mris_ca_label"] BR ["mris_ca_train"] BR
2.8. Flattening
["mris_flatten"] BR
2.9. SurfaceMisc
["mris2rgb"] BR ["mris_anatomical_stats"] BR ["mris_average_curvature"] BR ["mris_convert"] BR ["mris_curvature"] BR ["mris_euler_number"] BR ["mris_find_flat_regions"] BR ["mris_glm"] BR ["mris_make_average_surface"] BR ["mris_make_template"] BR ["mris_spherical_average"] BR ["mris_thickness"] BR ["mris_twoclass"] BR ["mrisp_paint"] BR ["mri_synthesize"] BR ["nmovie"] BR ["optseq2"] BR ["paint"] BR ["stat_normalize"] BR ["vss-dump"] BR