Results 1 - 25 of 42 results out of about 3772 pages. (0.98 seconds)
- FreeSurferWiki/LCN-CortLobes . . . 2 matches
- ...[[FreeSurferWiki|top]]
= LCN Cortical Lobes Dataset =
The '''LCN-!CortLobes''' dataset is a collection of manually-inspected cortical lobe labels created from FreeSurfer-processi...
- WikiUserName . . . 2 matches
- ...ikiUserName``s''': JaneASmith, janesmith, jsmith, jj3000, craZgrl999<<BR>>
On the FreeSurferWiki your username is a WikiName, which we call your WikiUserName. Your WikiUserName is...
- FreeSurferBeginnersGuide . . . 2 matches
- ...[[FreeSurferWiki|top]]
= FreeSurfer Beginners Guide =
!FreeSurfer is a freely available software package developed by investigators at the [[http://www.nmr.mgh.harvard.edu:|Athin...
- Contributors . . . 2 matches
- ...* BarryKosofsky
* DeborahBlacker
* DanielWeinberger
* AndreasMeyerLindberg
The FreeSurferWiki team includes:
* JennineAmato
* NicoleAucoin
* EvelinaBusa
* ElizabethFensterm...
- WorkFlows . . . 1 match
- ...[[FreeSurferWiki|top]] | [[FreeSurferWorkFlows|next]]
= WorkFlows =
The FreeSurfer tools, and brain image processing tools in general, are best understood in the context of a wor...
- ToolsAndCommands . . . 1 match
- ...[[FreeSurferWiki|top]]
= FreeSurfer and FS-Fast Tools and Commands =
== 1. FreeSurfer ==
* [[FreeSurferApplications|GUI applications]]
* [[FreeSurferCommands|Command-line tools...
- StriatumParcellation_Choi2012 . . . 1 match
- ...[[FreeSurferWiki|top]]
= Striatal Parcellation Estimated by Intrinsic Functional Connectivity =
Data from 1000 young healthy adults were registered using nonlinear deformation of ...
- SlicerWorkFlows . . . 1 match
- ...[[FreeSurferWiki|top]]
= Slicer Work Flows =
== Installation ==
* See the [[Slicer]] page.
== Loading Data in Slicer ==
* LoadFreeSurferAnatomicalData
* LoadFunctionalData
...
- RemoteAccess . . . 1 match
- ...[[FreeSurferWiki|top]]
= FreeSurfer Remote Access =
Suppose you want to run freesurfer from home remotely?
(this means freesurfer runs on a different computer, and the screen is ...
- InternalFreeSurferDistributions . . . 1 match
- ...[[FreeSurferWiki|top]]
= FreeSurfer Distributions for Internal Users =
== Distributions ==
== Access ==
Here are instructions on how to set-up your environment to use the Intern...
- HeritabilityAnalysis_Ge2015 . . . 1 match
- ...y-Analysis-(2015).aspx
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## HeritabilityAnalysis_Ge2015
[[FreeSurferWiki|top]]
= Heritability Maps of Cortical Structure Estimated with MEGHA =
We are di...
- HelpOnCommandTemplate . . . 1 match
- ...
'''See Also''' - Related commands in FreeSurfer.
'''Links''' - Relevant links on FreeSurferWiki. Useful for providing links to concepts.
'''Methods Description''' - Description...
- GettingAccess . . . 1 match
- ...et. Be sure to include your wiki username in the email.'''
To get write access to FreeSurferWiki you need to email <<MailTo(fswiki DASH help AT nmr DOT mgh DOT harvard DOT edu, fs...
- FswikiUpgrade . . . 1 match
- ...
[[FreeSurferWiki|fswiki]] engine has been upgraded from [[http://moinmo.in/|MoinMoin]] Release 1.2.2 to 1.6.3 (current stable). This was to enable a saner, better search primaril...
- FslWorkFlows . . . 1 match
- ...[[FreeSurferWiki|top]] | [[WorkFlows|previous]]
= FreeSurfer - FSL - FEAT Work Flows =
FslWorkFlows describes processing workflows for applying FreeSurfer tools to FSL fMRI analy...
- FsTutorial/MincFormat . . . 1 match
- ...[[FreeSurferWiki|top]] | [[FileFormats|previous]]
== The MINC Image Format ==
MINC stands for Medical Imaging NetCDF. It is a medical imaging data format and also an associated s...
- FsTutorial/MghFormat . . . 1 match
- ...[[FreeSurferWiki|top]] | [[FileFormats|previous]]
== The MGH/MGZ Volume Format ==
'''WORK IN PROGRESS'''
The .mgh file format is used to store high-resolution structural data an...
- FsTutorial/LtaFormat . . . 1 match
- ...[[FreeSurferWiki|top]] | [[FileFormats|previous]]
== The LTA Transform Format ==
'''WORK IN PROGRESS'''
LTA means Linear Transform Array. The .lta format is from subject ras to ...
- FsTutorial/GcaFormat . . . 1 match
- ...[[FreeSurferWiki|top]] | [[FileFormats|previous]]
== The GCA Subcortical Segmentation Atlas Volume Format ==
The .gca (Gaussian Classifier Atlas) file format encodes voxel label ...
- FsTutorial/DicomFormat . . . 1 match
- ...[[FreeSurferWiki|top]] | [[FileFormats|previous]]
== The DICOM Image Format ==
Digital Imaging and Communications in Medicine (DICOM) is a comprehensive set of standards for hand...
- FsTutorial/CorFormat . . . 1 match
- ...[[FreeSurferWiki|top]] | [[FileFormats|previous]]
== The COR Volume Format ==
COR volumes are used to store high-resolution structural data and other data which are to be overlai...
- FsTutorial/BshortFormat . . . 1 match
- ...[[FreeSurferWiki|top]] | [[FileFormats|previous]]
== The bshort Volume Format ==
The contents below are copied from http://airto.bmap.ucla.edu/BMCweb/HowTo/FileFormats.html
=== ...
- FsTutorial/BfloatFormat . . . 1 match
- ...[[FreeSurferWiki|top]] | [[FileFormats|previous]]
== The bfloat Volume Format ==
The contents below are copied from http://airto.bmap.ucla.edu/BMCweb/HowTo/FileFormats.html
=== ...
- FsTutorial/AnalyzeFormat . . . 1 match
- ...[[FreeSurferWiki|top]] | [[FileFormats|previous]]
== The Analyze Image Format ==
The Analyze format was developed some years ago to support the program of the same name written b...
- FsTutorial . . . 1 match
- ...[[FreeSurferWiki|top]]
== WARNING: The hyperlinks in the tables below used to download slides will NOT WORK in Google Chrome. Please use a different browser to access these slides...