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- FsFastWorkFlows . . . 1 match
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= FS-Fast Work Flows =
* FsFastAnlysisBySteps
* FsFastFunctionalConnectivityWalkthrough
== Overview and Data Hierarchy ==
* FsFastOverview
== Import...
- FsFastTutorialV5.1 . . . 1 match
- ...#pragma section-numbers on
[[https://surfer.nmr.mgh.harvard.edu/fswiki/Tutorials|Back to list of all tutorials]] | [[FsTutorial|Back to course page]]
This tutorial steps you throu...
- FsFastTutorialV4.5 . . . 1 match
- ...
[[FreeSurferWiki|top]] | [[Tutorials|previous]]
= NOTE:this tutorial only works with version 4.5 (not the current version) =
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[[FsFastTutorialV5.1|Here is the new tutorial f...
- FsFastAnlysisBySteps . . . 1 match
- ...[[FreeSurferWiki|top]]
'''# Unpack Data into the FSFAST Hierarchy using "unpackscmdir"'''
1. QA Check after unpacking
* '''A''' - Check unpacked data (t...
- FreeSurferWorkFlows . . . 1 match
- ...[[FreeSurferWiki|top]] | [[WorkFlows|previous]] | [[BasicReconstruction|next]]
= FreeSurfer Work Flows =
FreeSurferWorkFlows describes processing workflows for !FreeSurfer. An ov...
- FreeSurferGroupAnalysis . . . 1 match
- ...[[FreeSurferWiki|top]] | [[WorkFlows|previous]]
= FreeSurfer Group Analysis =
See [[http://surfer.nmr.mgh.harvard.edu/docs/ftp/pub/docs/fsfsl-mris_glm.pdf|Surface-based Group Ana...
- FreeSurferDistributions . . . 1 match
- ...[[FreeSurferWiki|top]]
= FreeSurfer Distributions =
Information on the available types of distributions, and their intended user class....
- FreeSurferApplications . . . 1 match
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= FreeSurfer GUI Tools =
* [[FreeviewGuide]]
* [[orient_mri]]
* TkMedit
* TkRegister
* TkRegister2
* TkSurfer
* [[Scuba]] (FreeSurferDev vers...
- FreeSurferAnalysisPipelineOverview . . . 1 match
- ...[[FreeSurferWiki|top]]
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~+'''FreeSurfer Analysis Pipeline Overview'''+~
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<<TableOfContents(2)>>
FreeSurfer is a set of software tools for the study of cortical and subco...
- FileFormats . . . 1 match
- ...[[FreeSurferWiki|top]]
= FreeSurfer File Formats =
FreeSurfer creates its own file formats for storing and manipulating volumetric, surface and transform data, including mgh, mgz,...
- DownloadAndInstall_long . . . 1 match
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[[FreeSurferWiki|top]]
= FreeSurfer Download and Install =
== Internal FreeSurfer ==
People within the [[MartinosCenter|MGH/MIT/HMS Martinos Center]] should use the [[InternalFr...
- CorticalParcellation_Yeo2011 . . . 1 match
- ...[[FreeSurferWiki|top]]
= Cortical Parcellation Estimated by Intrinsic Functional Connectivity =
Data from 1000 young, healthy adults were registered using surface-based alignment....
- CorticalParcellation . . . 1 match
- ...[[FreeSurferWiki|top]]
= Cortical Parcellation =
The FreeSurfer utilities [[mris_ca_train]] and [[mris_ca_label]] together implement a technique for automatically assigning a neur...
- CoordinateSystems . . . 1 match
- ...[[FreeSurferWiki|top]]
= FreeSurfer Coordinate Systems =
The "official" FreeSurfer Coordinate definitions can be found in the following power-points slides ('''SEE THESE FIRST'''...
- CerebellumParcellation_Buckner2011 . . . 1 match
- ...[[FreeSurferWiki|top]]
= Cerebellar Parcellation Estimated by Intrinsic Functional Connectivity =
Data from 1000 young healthy adults were registered using nonlinear deformation o...
- BugReporting . . . 1 match
- ...[[FreeSurferWiki|top]]
= Bug Reporting =
''' Submitting a request for help ''' <<BR>>
When submitting a request for help with your problems please be aware that the developers w...
- BrainmapOntology_Yeo2015 . . . 1 match
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[[FreeSurferWiki|top]]
= Nested Cognitive Ontology Estimated From 10,449 Experiments =
||We applied a hierarchical Bayesian model (figure on right) on 10,449 Brainmap experiment...