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To view the topological defects and how they were fixed, first run {{{ defect-seg --s subject }}} This will take a few min to run. Next, run defect-seg --help to get commands for viewing on the volume or surface. You can replace "tkmedit" and "tksurfer" with "tkmeditfv" and "tksurferfv" to use freeview instead of tkmedit/tksurfer. |
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| First, load the ?h.orig.nofix surface, then load the ?h.defect_labels as an overlay. Clicking "use surface color" will color the surface regions that have defects, which is very useful for fixing topological errors. | To view the defects without using defect-seg, first, load the ?h.orig.nofix surface, then load the ?h.defect_labels as an overlay. Clicking "use surface color" will color the surface regions that have defects, which is very useful for fixing topological errors. |
Up to FreeviewGuide |
Back to FreeviewManualTransformation |
Continue to FreeviewDTI |
(This page is currently under construction)
To view the topological defects and how they were fixed, first run
defect-seg --s subject
This will take a few min to run. Next, run defect-seg --help to get commands for viewing on the volume or surface. You can replace "tkmedit" and "tksurfer" with "tkmeditfv" and "tksurferfv" to use freeview instead of tkmedit/tksurfer.
Surfaces
Viewing Surface Defects
To view the defects without using defect-seg, first, load the ?h.orig.nofix surface, then load the ?h.defect_labels as an overlay. Clicking "use surface color" will color the surface regions that have defects, which is very useful for fixing topological errors.