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#pragma section-numbers on #pragma section-numbers off
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'''Index''' [wiki:Self:FreeSurferWiki top] | [wiki:Self:Tutorials previous]
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[[TableOfContents]] = FsFast Tutorial SlideShow =
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[[Navigation(slideshow)]]
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= Download the sample subject’s data =
= Get to know the Sessions Format =
= Make a directory for your Study =
= Make paradigm files for your experiment =
= Motion correct the data using “mc-sess” =
= Normalize signal intensity using “inorm-sess” =
= Set up session-level analysis using “mkanalysis-sessnew” =
= Average session-level data by condition using “selxavg-sess” =
= Define an omnibus contrast using “mkcontrast-sess” =
= Compute statistical maps of the omnibus contrast using “stxgrinder-sess” =
= Run functional/structural registration using “autoreg-sess” =
= Interfacing with FreeSurfer =
= Functional/Anatomical Registration =
= Visualization =
== Visualization: slice-based using “sliceview-sess” ==
== Viewing Bert’s hemodynamic responses ==
== Visualization: surface-based using “paint-sess” and “surf-sess” ==
 * ["/000 Frontmatter"]
 * ["/300 Download data"]
 * ["/400 Get familiar with sessions format"]
 * ["/500 Make a directory for your study"]
 * ["/600 Make paradigm files for your experiment"]
 * ["/700 Motion correct the data"]
 * ["/800 Normalize signal intensity"]
 * ["/900 Set up session-level analysis"]
 * ["/905 Average session-level data by condition"]
 * ["/910 Define an omnibus contrast"]
 * ["/920 Compute statistical maps of the omnibus contrast"]
 * ["/930 Run functional/structural registration"]
 * ["/940 Visualization"]

[wiki:FreeSurferWiki top] | [wiki:Tutorials previous]

FsFast Tutorial SlideShow

Navigation(slideshow)

  • ["/000 Frontmatter"]
  • ["/300 Download data"]
  • ["/400 Get familiar with sessions format"]
  • ["/500 Make a directory for your study"]
  • ["/600 Make paradigm files for your experiment"]
  • ["/700 Motion correct the data"]
  • ["/800 Normalize signal intensity"]
  • ["/900 Set up session-level analysis"]
  • ["/905 Average session-level data by condition"]
  • ["/910 Define an omnibus contrast"]
  • ["/920 Compute statistical maps of the omnibus contrast"]
  • ["/930 Run functional/structural registration"]
  • ["/940 Visualization"]

FsFastTutorialV4.5 (last edited 2011-05-19 15:29:07 by NickSchmansky)