Index

TableOfContents

1. Download the sample subject’s data

2. Get to know the Sessions Format

3. Make a directory for your Study

4. Make paradigm files for your experiment

5. Motion correct the data using “mc-sess”

6. Normalize signal intensity using “inorm-sess”

7. Set up session-level analysis using “mkanalysis-sessnew”

8. Average session-level data by condition using “selxavg-sess”

9. Define an omnibus contrast using “mkcontrast-sess”

10. Compute statistical maps of the omnibus contrast using “stxgrinder-sess”

11. Run functional/structural registration using “autoreg-sess”

12. Interfacing with FreeSurfer

13. Functional/Anatomical Registration

14. Visualization

14.1. Visualization: slice-based using “sliceview-sess”

14.2. Viewing Bert’s hemodynamic responses

14.3. Visualization: surface-based using “paint-sess” and “surf-sess”