#acl LcnGroup:read,write,delete,revert All:read

=== FreeSurfer Course, 27-29 June 2012 ===

=== Amsterdam, Netherlands ===

Home page: [[http://www.freesurfercourseamsterdam.nl/|www.freesurfercourseamsterdam.nl]]

Hosted by: [[http://www.vumc.com/patientcare/|Dept. of Radiology, VU University Medical Center]]

Venue: [[http://www.griffioen.vu.nl/nl/zaalverhuur/zalen/griffioenzaal.asp]]

Location: [[http://maps.google.com/maps?q=Uilenstede+106,+1183+AM+AMSTELVEEN,+THE+NETHERLANDS&ll=52.319052,4.874411&spn=0.022849,0.034032&oe=utf-8&client=firefox-a&hnear=Uilenstede+106,+Amstelveen,+Noord-Holland,+The+Netherlands&gl=us&t=m&z=15|Google Maps]]

'''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fscourse_amsterdam_2012.jpg|------------------------------ CLASS PHOTO ------------------------------]]'''

=== Wednesday, June 27th - Introduction / Single Subject / MRI Acquisition / Troubleshooting ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||8:30 - 9:45 ||'''Course Registration''' (Note: overlaps with optional tutorials)||sign-in || staff ||
||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]]   [[http://www.ee.surrey.ac.uk/Teaching/Unix|online practice]]  ||tutorial || Allison Stevens ||
||9:30 - 10:00 || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk || Allison Stevens ||
||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.njs.ppt|Introduction to Freesurfer|&do=get]] ||talk || Nick Schmansky ||
||10:30 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.njs.ppt|FreeSurfer Applications|&do=get]], [[Publications]] ||talk || Nick Schmansky ||
||11:00 - 11:30 ||'''break''' || || ||
||11:30 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsreconIglesias.ppt|Analyzing the Individual Subject]] ||talk || J. Eugenio Iglesias ||
||12:30 - 1:30 ||'''lunch''' ||-- ||-- ||
||1:30 - 2:00 ||Tkmedit/Tksurfer demonstration ||demo || Nick Schmansky ||
||2:00 - 3:00 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||3:00 - 3:30 ||'''break''' || || ||
||3:30 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe||
||4:00 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.AS.ppt|Failure Modes|&do=get]] ||talk || Allison Stevens ||
||4:30 - 5:30 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison ||

=== Thursday, June 28th - MRI Basics / Registration / ROIs / Group Analysis/ Longitudinal / Multimodal ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.AVDK.ppt|A Non-physicist's Intro to MR|&do=get]], [[http://surfer.nmr.mgh.harvard.edu/pub/docs/MRI_Hanson/Bloch.swf|Bloch concepts]] ||talk || Andre van der Kouwe||
||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration+registration.ppt|Registration & Multimodal Methods|&do=get]]|| talk || Lilla Zollei ||
||10:30 - 10:45 ||'''break''' || || ||
||10:45 - 11:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.AS.ppt|ROI Analysis|&do=get]] ||talk || Nick Schmansky ||
||11:15 - 11:45 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||11:45 - 12:45 ||'''lunch''' ||-- ||-- ||
||12:45 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] ||talk || J. Eugenio Iglesias ||
||1:45 - 2:15 ||QDEC demonstration ||demo ||Nick Schmansky ||
||2:15 - 2:45 ||'''break''' || || ||
||2:45 - 3:15 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||3:15 - 3:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||3:45 - 4:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.LZ.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei ||
||4:15 - 5:00 || Freeview Demo, [[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff, Allison Stevens ||
||4:15 - 5:00 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||

=== Friday, June 29th - Diffusion / Tractography / MoCo / Q&A ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Diffusion Data Processing|&do=get]],  [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|dtrecon intro|&do=get]] ||talk ||J. Eugenio Iglesias ||
||9:30 - 10:30 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||
||10:30 - 11:00 ||'''break''' || || ||
||11:00 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.LZ.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Lilla Zollei||
||11:30 - 12:30 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||12:30 - 1:30 ||'''lunch''' ||-- ||-- ||
||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Andre van der Kouwe||
||2:00 - 3:00 || Quality Checking a Recon ||demo ||Allison Stevens ||
||3:00 - 3:30 ||'''break and evaluations''' || || ||
||3:30 - 4:00 ||Question and Answer Session, FsQuiz ||talk ||staff ||