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|| 8:30 - 9:00 || Course Registration || sign-in || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/boston_fs_course_jan2009.jpg|staff|&do=get]] ||
|| 9:00 - 9:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.2009.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl ||
|| 9:30 - 10:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Bruce Fischl || 		|| 8:30 - 9:00 || Course Registration || sign-in || ||
|| 9:00 - 9:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.2009.ppt|Introduction to Freesurfer|&do=get]]|| talk || David Salat||
|| 9:30 - 10:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Doug Greve||
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|| 12:15 - 12:45 || '''Working lunch''' Optional talk - Introduction to Diffusion Processing || talk || Lilla Zollei ||
|| 12:45 - 1:15 || '''Working lunch''' Optional talk - MRI Acquisition Methods for Morphometry || talk || Andre van der Kouwe || 		|| 12:45 - 1:15 || '''lunch''' || || ||
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|| 3:00 - 3:45 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu || || 3:00 - 3:45 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Doug Greve ||
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|| 4:45 - 5:00 || QDEC demonstration || demo || Nick Schmansky || || 4:45 - 5:00 || QDEC demonstration || demo || Doug Greve ||
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|| 5:45 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky ||
|| 5:45 - || '''optional -''' [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||
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|| 9:30 - 10:00 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] || talk || Martin Reuter || || 9:30 - 10:00 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] || talk || David Salat ||
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|| 11:00 - 11:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl|| || 11:00 - 11:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Doug Greve||
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|| 4:00 - 4:20 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei ||
|| 4:20 - 4:40|| [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki ||
|| 4:40 - 5:00 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.2009.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||
|| 5:00 - 5:30 || Question and Answer Session, FsQuiz || talk || staff ||

FreeSurfer Course, February 11 and 12, 2010

Cape Town, South Africa

Thursday, February 11th - Introduction / Single Subject / Group Analysis

Time

Title

Type

Lecturer

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly

tutorial

Allison Stevens

8:30 - 9:00

Course Registration

sign-in

9:00 - 9:30

Introduction to Freesurfer

talk

David Salat

9:30 - 10:30

Analyzing the Individual Subject

talk

Doug Greve

10:30 - 10:45

break

10:45 - 11:15

Tkmedit/Tksurfer demonstration

demo

Doug Greve

11:15 - 11:45

Interaction with Individual Subject Data

tutorial

staff

11:45 - 12:15

Surface-based Smoothing/Surface-based Registration

talk

Doug Greve

12:45 - 1:15

lunch

1:15 - 2:15

ROI Analysis

talk

Doug Greve

2:15 - 2:45

ROI Analysis

tutorial

staff

2:45 - 3:00

break

3:00 - 3:45

Group Analysis / GLM / Multiple Comparisons

talk

Doug Greve

3:45 - 4:45

Group Analysis / Multiple Comparisons - mri_glmfit

tutorial

staff

4:45 - 5:00

QDEC demonstration

demo

Doug Greve

5:00 - 5:45

Group Analysis - qdec

tutorial

staff

Friday, February 12th - ROIs / Troubleshooting / Multi-Modal / Q&A / Future Directions

Time

Title

Type

Lecturer

9:00 - 9:30

Accuracy, Reliability and Validation

talk

David Salat

9:30 - 10:00

Longitudinal FreeSurfer

talk

David Salat

10:00 - 10:45

FreeSurfer Applications

talk

David Salat

10:45 - 11:00

break

11:00 - 11:30

Failure Modes

talk

Doug Greve

11:30 - 12:30

Troubleshooting, Troubleshooting demonstration

tutorial

staff, Allison

12:30 - 1:00

Working lunch Optional demo - Step-by-Step Through a Recon

demo

TBD

1:00 - 1:30

Working lunch Optional talk - Combined Gray Matter/White Matter Analysis of the Aging Brain

talk

David Salat

1:30 - 2:45

Multi-Modal Integration: ROI and Surface-based Analysis

talk

Doug Greve

2:45 - 3:45

Multi-Modal Integration

tutorial

staff

3:45 - 4:00

break

4:00 - 5:00

Future Directions of FreeSurfer:

FsTutorial/CapeTown2010CourseSchedule (last edited 2010-02-11 11:43:38 by AllisonStevens)