Diff for "FsTutorial/CapeTown2010CourseSchedule"

Differences between revisions 7 and 8

FreeSurfer Course, 11-12 February 2010

Cape Town, South Africa

Centre for High Performance Computing (CHPC), map

Thursday, February 11th - Introduction / Single Subject / Group Analysis

Time	Title	Type	Lecturer
8:00 - 8:30	optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly	tutorial	Allison Stevens
8:30 - 9:00	Course Registration	sign-in
9:00 - 9:30	Introduction to Freesurfer	talk	David Salat
9:30 - 10:30	Analyzing the Individual Subject	talk	Doug Greve
10:30 - 10:45	break
10:45 - 11:15	Tkmedit/Tksurfer demonstration	demo	Doug Greve
11:15 - 11:45	Interaction with Individual Subject Data	tutorial	staff
11:45 - 12:15	MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
12:15 - 12:30	break
12:30 - 1:00	Working lunch Optional talk - Combined Gray Matter/White Matter Analysis of the Aging Brain	talk	David Salat
1:00 - 1:30	Lunch
1:30 - 2:15	FreeSurfer Applications	talk	David Salat
2:15 - 2:45	Surface-based Smoothing/Surface-based Registration	talk	Doug Greve
2:45 - 3:00	break
3:00 - 3:45	Group Analysis / GLM / Multiple Comparisons	talk	Doug Greve
3:45 - 4:00	QDEC demonstration	demo	Doug Greve/Allison Stevens
4:00 - 5:00	Group Analysis / Multiple Comparisons - mri_glmfit	tutorial	staff
5:00 - 5:45	Group Analysis - qdec	tutorial	staff

Time	Title	Type	Lecturer
9:00 - 9:30	Accuracy, Reliability and Validation	talk	David Salat
9:30 - 10:30	ROI Analysis	talk	Doug Greve
10:30 - 11:00	ROI Analysis	tutorial	staff
11:00 - 11:30	break
11:30 - 12:00	Failure Modes	talk	Allison Stevens
12:00 - 12:30	Step-by-Step Through a Recon, Troubleshooting Tutorial demonstration	demo	Allison
12:30 - 1:30	Troubleshooting	tutorial	staff
1:30 - 2:00	lunch
2:00 - 3:15	Multi-Modal Integration: ROI and Surface-based Analysis	talk	Doug Greve
3:15 - 4:15	Multi-Modal Integration	tutorial	staff
4:15 - 4:30	break
4:30 - 5:15	fMRI	talk	Doug Greve

FsTutorial/CapeTown2010CourseSchedule (last edited 2010-02-11 11:43:38 by AllisonStevens)

-Deletions are marked like this.
+Additions are marked like this.
 Line 16:
-|| 11:45 - 12:15 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve ||

|| 12:45 - 1:15 || '''lunch''' || || ||

|| 1:15 - 2:15 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve ||

|| 2:15 - 2:45 || [[FsTutorial/AnatomicalROI|ROI Analysis]] || tutorial || staff ||
+|| 11:45 - 12:15 || MRI Acquisition Methods for Morphometry || talk || Andre van der Kouwe  ||

|| 12:15 - 12:30 || '''break''' || || ||

|| 12:30 - 1:00 || '''Working lunch''' Optional talk - Combined Gray Matter/White Matter Analysis of the Aging Brain || talk || David Salat ||

|| 1:00 - 1:30 || '''Lunch''' || || ||

|| 1:30 - 2:15 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.2009.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||

|| 2:15 - 2:45 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve ||
-Line 22:
+Line 24:
-|| 3:45 - 4:45 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit]] || tutorial || staff ||

|| 4:45 - 5:00 || QDEC demonstration || demo || Doug Greve ||
+|| 3:45 - 4:00 || QDEC demonstration || demo || Doug Greve/Allison Stevens ||

|| 4:00 - 5:00 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit]] || tutorial || staff ||
-Line 26:
+Line 28:
-=== Friday, February 12th - ROIs / Troubleshooting / Multi-Modal / Q&A / Future Directions ===
+=== Friday, February 12th - ROIs / Troubleshooting / Multi-Modal / Q&A ===
-Line 30:
+Line 32:
-|| 9:30 - 10:00 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] || talk || David Salat ||

|| 10:00 - 10:45 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.2009.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||

|| 10:45 - 11:00 || '''break''' || || ||

|| 11:00 - 11:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Doug Greve||

|| 11:30 - 12:30 || [[FsTutorial/TroubleshootingData|Troubleshooting]], Troubleshooting demonstration || tutorial || staff, Allison ||

|| 12:30 - 1:00 || '''Working lunch''' Optional demo - Step-by-Step Through a Recon || demo || TBD ||

|| 1:00 - 1:30 || '''Working lunch''' Optional talk - Combined Gray Matter/White Matter Analysis of the Aging Brain || talk || David Salat ||

|| 1:30 - 2:45 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration: ROI and Surface-based Analysis|&do=get]] || talk || Doug Greve ||

|| 2:45 - 3:45 || [[FsTutorial/MultiModal|Multi-Modal Integration]] || tutorial || staff ||

|| 3:45 - 4:00 || '''break''' || || ||

|| 4:00 - 5:00 || Future Directions of !FreeSurfer: || || ||
+|| 9:30 - 10:30 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve ||

|| 10:30 - 11:00 || [[FsTutorial/AnatomicalROI|ROI Analysis]] || tutorial || staff ||

|| 11:00 - 11:30 || '''break''' || || ||

|| 11:30 - 12:00 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Allison Stevens||

|| 12:00 - 12:30 || Step-by-Step Through a Recon, Troubleshooting Tutorial demonstration || demo || Allison ||

|| 12:30 - 1:30 || [[FsTutorial/TroubleshootingData|Troubleshooting]] || tutorial || staff ||

|| 1:30 - 2:00 || '''lunch''' || ||  ||

|| 2:00 - 3:15 || [[ftp://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration: ROI and Surface-based Analysis|&do=get]] || talk || Doug Greve ||

|| 3:15 - 4:15 || [[FsTutorial/MultiModal|Multi-Modal Integration]] || tutorial || staff ||

|| 4:15 - 4:30 || '''break''' || || ||

|| 4:30 - 5:15 || fMRI || talk || Doug Greve ||