FreeSurfer Course, 11-12 February 2010

Cape Town, South Africa

Centre for High Performance Computing (CHPC), map

Thursday, February 11th - Introduction / Single Subject / Group Analysis

Time

Title

Type

Lecturer

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly

tutorial

Allison Stevens

8:30 - 9:00

Course Registration

sign-in

9:00 - 9:30

Introduction to Freesurfer

talk

David Salat

9:30 - 10:30

Analyzing the Individual Subject

talk

Doug Greve

10:30 - 10:45

break

10:45 - 11:15

Tkmedit/Tksurfer demonstration

demo

Doug Greve

11:15 - 11:45

Interaction with Individual Subject Data

tutorial

staff

11:45 - 12:15

MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

12:15 - 12:30

break

12:30 - 1:00

Working lunch Optional talk - Combined Gray Matter/White Matter Analysis of the Aging Brain

talk

David Salat

1:00 - 1:30

Lunch

1:30 - 2:15

FreeSurfer Applications

talk

David Salat

2:15 - 2:45

Surface-based Smoothing/Surface-based Registration

talk

Doug Greve

2:45 - 3:00

break

3:00 - 3:45

Group Analysis / GLM / Multiple Comparisons

talk

Doug Greve

3:45 - 4:00

QDEC demonstration

demo

Doug Greve/Allison Stevens

4:00 - 5:00

Group Analysis / Multiple Comparisons - mri_glmfit

tutorial

staff

5:00 - 5:45

Group Analysis - qdec

tutorial

staff

Friday, February 12th - ROIs / Troubleshooting / Multi-Modal / Q&A

Time

Title

Type

Lecturer

9:00 - 9:30

Accuracy, Reliability and Validation

talk

David Salat

9:30 - 10:30

ROI Analysis

talk

Doug Greve

10:30 - 11:00

ROI Analysis

tutorial

staff

11:00 - 11:30

break

11:30 - 12:00

Failure Modes

talk

Allison Stevens

12:00 - 12:30

Step-by-Step Through a Recon, Troubleshooting Tutorial demonstration

demo

Allison

12:30 - 1:30

Troubleshooting

tutorial

staff

1:30 - 2:00

lunch

2:00 - 3:15

Multi-Modal Integration: ROI and Surface-based Analysis

talk

Doug Greve

3:15 - 4:15

Multi-Modal Integration

tutorial

staff

4:15 - 4:30

break

4:30 - 5:15

fMRI

talk

Doug Greve