Describe FsTutorial/CourseSetup_easy here.

FreeSurfer Course Setup

Notes on how to do the physical setup of the computers and stuff for the course. Also see FreesurferCourseAdminNotes

Laptop Hardware

Laptop Software

Tutorial Data

Startup Script

## Set location of tutorial location
export TUTORIAL_DATA=<location_of_tutorial_data>

## Set location of FSL (Required for Diffusion and TRACULA tutorials only)
export FSLDIR=<location_of_fsl_installation>

## Set location of Matlab and other variable (Required for FSFAST tutorial only)
export FS_MCRROOT=<location_of_matlab_installation>
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"$FS_MCRROOT/runtime/glnxa64"
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"$FS_MCRROOT/bin/glnxa64"
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"$FS_MCRROOT/sys/os/glnxa64" 
export FS_SPMREG_USE_BIN=1
export FS_MKCON_USE_BIN=1
export FS_SXA3_USE_BIN=1

## Source freesurfer
export FREESURFER_HOME=<location_of_freesurfer_installation>
source $FREESURFER_HOME/SetUpFreeSurfer.sh

Testing

  $> <source_freesurfer>

  ## Run a quick test.  
  $> test_tutorials.sh -quick
  
  ## If this above command runs to completion without crashing than your probably all set.

  ## Run the Multi-Modal Integration tutorial
  $> test_tutorials.sh -multimodal

  ## Run the TRACULA tutorial
  $> test_tutorials.sh -tracula

  ## Display help and other options
  $> test_tutorials.sh -help