Deletions are marked like this. | Additions are marked like this. |
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|| 12:15 - 1:15 || Lunch || -- || -- || || 1:15 - 2:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve || || 2:15 - 2:45 || [[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] || tutorial || staff || || 2:45 - 3:00 || '''break''' || || || || 3:00 - 3:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu || || 3:45 - 4:45 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] || tutorial || staff || || 4:45 - 5:00 || QDEC demonstration || demo || Nick Schmansky || || 5:00 - 5:45 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] || tutorial || staff || || 5:45 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky || || 5:45 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens || |
|| 12:15 - 1:15 || '''Lunch''' || -- || -- || || ''12:30 - 1:00'' || ''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]]'' || ''talk'' || ''David Salat''|| || 1:15 - 1:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|Intro to MR|&do=get]] || talk || Dylan Tisdall || || 1:45 - 2:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] || talk || Andre van der Kouwe || || 2:30 - 2:45 || '''break''' || || || || 2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing|| talk || Martin Reuter || || 3:15 - 3:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl|| || 3:45 - 4:45 || Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]]|| tutorial || staff, Allison || || 4:45 - 5:30 || Quality Checking a Recon || demo || Allison Stevens || || 5:30 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky || || 5:30 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens || |
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|| 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat || || 9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing|| talk || Martin Reuter || || 10:00 - 10:30 || Longitudinal Tutorial || tutorial || staff || || 10:30 - 11:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat || || 11:15 - 11:30 || '''break''' || || || || 11:30 - 12:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl|| || 12:00 - 1:00 || Lunch || -- || -- || || 1:00 - 2:00 || Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]]|| tutorial || staff, Allison || || 2:00 - 2:30 || Quality Checking a Recon || demo || Allison Stevens || || 2:30 - 3:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Doug Greve || || 3:45 - 4:00 || '''break''' || || || || 4:00 - 5:00 || [[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] || tutorial || staff || || 5:00 - 5:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei || |
|| 9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu || || 10:00 - 11:00 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] || tutorial || staff || || 11:00 - 11:30 || QDEC demonstration || demo || Nick Schmansky || || 11:30 - 12:30 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] || tutorial || staff || || 12:30 - 1:30 || '''Lunch''' || -- || -- || || ''12:45 - 1:15'' || ''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]]'' || ''talk'' || ''Bruce Fischl''|| || 1:30 - 2:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve || || 2:30 - 3:00 || [[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] || tutorial || staff || || 3:00 - 3:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei || || 3:30 - 3:45 || '''break''' || || || || 3:45 - 4:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Introduction to Diffusion Processing|&do=get]] || talk || Lilla Zollei || || 4:45 - 5:45 || Diffusion Tutorial || tutorial || staff || || 5:45 - 6:05 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki || |
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|| 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Introduction to Diffusion Processing|&do=get]] || talk || Lilla Zollei || || 9:30 - 10:00 || Combined Gray Matter/White Matter Analysis of the Aging Brain || talk || David Salat || || 10:30 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki || |
|| 2:30 - 3:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Doug Greve || || 4:00 - 5:00 || [[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] || tutorial || staff || || 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat || |
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|| 11:15 - 12:00 || Trackvis Tutorial || talk || staff || || 12:00 - 12:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] || talk || Andre van der Kouwe || |
|
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|| 3:45 - 4:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl || | || 3:45 - 4:15 || || talk || Bruce Fischl || |
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*remove David's Tuesday talks |
FreeSurfer Course, October 4 and 5, 2010
MGH, Charlestown Navy Yard, Building 149, Conference Room A
Monday, October 4th - Introduction / Single Subject / ROIs /Group Analysis
Time |
Title |
Type |
Lecturer |
8:00 - 8:30 |
optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly |
tutorial |
Allison Stevens |
8:30 - 9:00 |
optional - Intro to FreeSurfer Jargon |
talk |
Allison Stevens |
8:30 - 9:00 |
Course Registration |
sign-in |
|
9:00 - 9:30 |
talk |
Bruce Fischl |
|
9:30 - 10:30 |
talk |
Bruce Fischl |
|
10:30 - 10:45 |
break |
|
|
10:45 - 11:15 |
Tkmedit/Tksurfer demonstration |
demo |
Doug Greve |
11:15 - 11:45 |
tutorial |
staff |
|
11:45 - 12:15 |
talk |
Doug Greve |
|
12:15 - 1:15 |
Lunch |
-- |
-- |
12:30 - 1:00 |
Optional Lunch Talk- FreeSurfer Applications |
talk |
David Salat |
1:15 - 1:45 |
talk |
Dylan Tisdall |
|
1:45 - 2:30 |
talk |
Andre van der Kouwe |
|
2:30 - 2:45 |
break |
|
|
2:45 - 3:15 |
talk |
Martin Reuter |
|
3:15 - 3:45 |
talk |
Bruce Fischl |
|
3:45 - 4:45 |
Troubleshooting Demonstration, Troubleshooting Tutorial |
tutorial |
staff, Allison |
4:45 - 5:30 |
Quality Checking a Recon |
demo |
Allison Stevens |
5:30 - |
optional - FreeSurfer Installation on Personal Laptops |
one-on-one |
Nick Schmansky |
5:30 - |
optional - Start Processing Your Own Data |
one-on-one |
Allison Stevens |
Tuesday, October 5th - Troubleshooting / Multi-Modal / Q&A / Future Directions
Time |
Title |
Type |
Lecturer |
9:00 - 10:00 |
talk |
Mert Sabuncu |
|
10:00 - 11:00 |
tutorial |
staff |
|
11:00 - 11:30 |
QDEC demonstration |
demo |
Nick Schmansky |
11:30 - 12:30 |
tutorial |
staff |
|
12:30 - 1:30 |
Lunch |
-- |
-- |
12:45 - 1:15 |
Optional Lunch Talk- Inferring architectonic boundaries from in-vivo MRI |
talk |
Bruce Fischl |
1:30 - 2:30 |
talk |
Doug Greve |
|
2:30 - 3:00 |
tutorial |
staff |
|
3:00 - 3:30 |
talk |
Lilla Zollei |
|
3:30 - 3:45 |
break |
|
|
3:45 - 4:45 |
talk |
Lilla Zollei |
|
4:45 - 5:45 |
Diffusion Tutorial |
tutorial |
staff |
5:45 - 6:05 |
talk |
Anastasia Yendiki |
|
5:30 - |
optional - FreeSurfer Installation on Personal Laptops |
one-on-one |
Nick Schmansky |
5:30 - |
optional - Start Processing Your Own Data |
one-on-one |
Allison Stevens |
Wednesday, October 6th -
2:30 - 3:45 |
talk |
Doug Greve |
|
4:00 - 5:00 |
tutorial |
staff |
|
9:00 - 9:30 |
talk |
David Salat |
|
11:00 - 11:15 |
break |
|
|
12:30 - 1:30 |
Lunch |
-- |
-- |
1:30 - 2:30 |
FSFAST |
talk |
Doug Greve |
2:30 - 3:30 |
FSFAST |
tutorial |
staff |
3:30 - 3:45 |
break |
|
|
3:45 - 4:45 |
Future Directions of FreeSurfer: |
|
|
3:45 - 4:15 |
|
talk |
Bruce Fischl |
4:15 - 4:45 |
Other Future Directions |
talk |
? |
4:45 - 5:15 |
Question and Answer Session, FsQuiz |
talk |
staff |