FreeSurfer Course, October 4 and 5, 2010

MGH, Charlestown Navy Yard, Building 149, Conference Room A

Monday, October 4th - Introduction / Single Subject / ROIs /Group Analysis

Time

Title

Type

Lecturer

8:00 - 8:30

optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly

tutorial

Allison Stevens

8:30 - 9:00

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens

8:30 - 9:00

Course Registration

sign-in

staff

9:00 - 9:30

Introduction to Freesurfer

talk

Bruce Fischl

9:30 - 10:30

Analyzing the Individual Subject

talk

Bruce Fischl

10:30 - 10:45

break

10:45 - 11:15

Tkmedit/Tksurfer demonstration

demo

Doug Greve

11:15 - 11:45

Interaction with Individual Subject Data Tutorial

tutorial

staff

11:45 - 12:15

Surface-based Smoothing/Surface-based Registration

talk

Doug Greve

12:15 - 1:15

Lunch

--

--

1:15 - 2:15

ROI Analysis

talk

Doug Greve

2:15 - 2:45

ROI Analysis Tutorial

tutorial

staff

2:45 - 3:00

break

3:00 - 3:45

Group Analysis / GLM / Multiple Comparisons

talk

Mert Sabuncu

3:45 - 4:45

Group Analysis / Multiple Comparisons - mri_glmfit Tutorial

tutorial

staff

4:45 - 5:00

QDEC demonstration

demo

Nick Schmansky

5:00 - 5:45

Group Analysis - qdec Tutorial

tutorial

staff

5:45 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

Nick Schmansky

5:45 -

optional - Start Processing Your Own Data

one-on-one

Allison Stevens

Tuesday, October 5th - Troubleshooting / Multi-Modal / Q&A / Future Directions

Time

Title

Type

Lecturer

9:00 - 9:30

Accuracy, Reliability and Validation

talk

David Salat

9:30 - 10:00

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

10:00 - 10:30

Longitudinal Tutorial

tutorial

staff

10:30 - 11:15

FreeSurfer Applications

talk

David Salat

11:15 - 11:30

break

11:30 - 12:00

Failure Modes

talk

Bruce Fischl

12:00 - 1:00

Lunch

--

--

1:00 - 2:00

Troubleshooting Demonstration, Troubleshooting Tutorial

tutorial

staff, Allison

2:00 - 2:30

Quality Checking a Recon

demo

Allison Stevens

2:30 - 3:45

Multi-Modal Integration

talk

Doug Greve

3:45 - 4:00

break

4:00 - 5:00

Multi-Modal Integration Tutorial

tutorial

staff

5:00 - 5:30

Combined Volume and Surface Registration

talk

Lilla Zollei

5:30 -

optional - FreeSurfer Installation on Personal Laptops

one-on-one

Nick Schmansky

5:30 -

optional - Start Processing Your Own Data

one-on-one

Allison Stevens

Wednesday, October 6th -

9:00 - 9:30

Introduction to Diffusion Processing

talk

Lilla Zollei

9:30 - 10:00

Combined Gray Matter/White Matter Analysis of the Aging Brain

talk

David Salat

10:30 - 11:00

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

11:00 - 11:15

break

11:15 - 12:00

Trackvis Tutorial

talk

staff

12:00 - 12:30

MRI Acquisition Methods for Morphometry

talk

Andre van der Kouwe

12:30 - 1:30

Lunch

--

--

1:30 - 2:30

FSFAST

talk

Doug Greve

2:30 - 3:30

FSFAST

tutorial

staff

3:30 - 3:45

break

3:45 - 4:45

Future Directions of FreeSurfer:

3:45 - 4:15

Inferring architectonic boundaries from in-vivo MRI

talk

Bruce Fischl

4:15 - 4:45

Other Future Directions

talk

?

4:45 - 5:15

Question and Answer Session, FsQuiz

talk

staff

*remove David's Tuesday talks