Diff for "FsTutorial/Jan2009CourseSchedule"

Differences between revisions 1 and 91 (spanning 90 versions)

Tuesday, January 20th - Introduction / Single Subject / Group Analysis

Time	Title	Type	Lecturer
8:00 - 9:00	Course Registration	sign-in	staff
8:00 - 8:30	optional - Unix Tutorial for FreeSurfer 1. Surrey, 2. O'Reilly	tutorial	Allison Stevens
9:00 - 9:20	Introduction to Freesurfer	talk	Bruce Fischl
9:20 - 10:00	FreeSurfer Applications	talk	David Salat
10:00 - 10:30	Reliability/Validation of FreeSurfer	talk	David Salat
10:30 - 10:45	break
10:45 - 11:45	Analyzing the Individual Subject	talk	Doug Greve
11:45 - 12:30	lunch		Obama
12:30 - 1:00	Tkmedit/Tksurfer demonstration	demo	Doug Greve
1:00 - 1:30	Interaction with Individual Subject Data	tutorial	staff
1:30 - 2:45	Group Analysis / GLM / Multiple Comparisons	talk	Doug Greve
2:45 - 3:00	QDEC demonstration	demo	Nick Schmansky
3:00 - 3:15	break
3:15 - 4:15	Group Analysis / Multiple Comparisons - mri_glmfit	tutorial	staff
4:15 - 5:00	Group Analysis - qdec	tutorial	staff
5:00 -	optional - FreeSurfer Installation on Personal Laptops	one-on-one	Nick Schmansky
5:00 -	optional - Start Processing Your Own Data	one-on-one	Allison Stevens

Wednesday, January 21st - ROIs / Troubleshooting / Multi-Modal / QA / Future Directions

Time	Title	Type	Lecturer
9:00 - 9:45	ROI Analysis	talk	Doug Greve
9:45 - 10:45	ROI Analysis	tutorial	staff
10:45 - 11:00	break
11:00 - 11:15	Failure Modes	talk	Bruce Fischl
11:15 - 12:15	Troubleshooting	tutorial	staff
12:15 - 1:00	lunch
1:00 - 2:15	Multi-Modal Integration: ROI and Surface-based Analysis	talk	Doug Greve
2:15 - 3:15	Multi-Modal Integration	tutorial	staff
3:15 - 3:30	break
3:30 - 4:30	Question and Answer Session	talk	staff
4:30 - 6:00	Future Directions of FreeSurfer:
4:30 - 5:00	Inferring architectonic boundaries from in-vivo MRI	talk	Bruce Fischl
5:00 - 5:20	Combined Volume and Surface Registration	talk	Lilla Zollei
5:20 - 5:40	TRActs Constrained on UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
5:40 - 6:00	Automated segmentation of hippocampal subfields	talk	Koen Van Leemput

FsTutorial/Jan2009CourseSchedule (last edited 2009-12-11 16:12:06 by NickSchmansky)

-  ⇤ ← Revision 1 as of 2008-12-11 20:00:14 → 
  Size: 1963
  Editor: NickSchmansky
  Comment:
+   ← Revision 91 as of 2009-01-18 13:16:26 → ⇥
  Size: 3495
  Editor: NickSchmansky
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
-#acl AdminGroup:read,write,delete,revert All:
+## #acl AdminGroup:read,write,delete,revert AdrianKCLee:read,write All: read
 Line 3:
-=== Tuesday January 20: Introduction to FreeSurfer ===
+=== Tuesday, January 20th - Introduction / Single Subject / Group Analysis ===
 Line 5:
-|| 8:30 - 9:15 || Unix Tutorial (optional) || tutorial || Allison Stevens || slide ||
|| 9:30 - 10:30 || Introduction to !FreeSurfer || talk || Doug Greve || slide ||
|| 10:30 - 11:30 || !FreeSurfer Applications || talk || David Salat || slide ||
|| 11:30 - 12:00 || Reliability/Validation of !FreeSurfer || talk || David Salat || slide ||
|| 12:00 - 1:00 || '''lunch''' || || || ||
|| 1:00 - 2:00 || Analyzing the Individual Subject || talk|| Doug Greve || slide ||
|| 1:00 - 2:00 || Tkmedit/Tksurfer demonstration || demo || Doug Greve || tkmedit,tksurfer ||
|| 2:00 - 3:00 || Interaction with Individual Subject Data || tutorial || staff || [[FsTutorial]] ||
|| 3:00 - 4:00 || Group Analysis/GLM || talk || Doug Greve || slide ||
|| 4:00 - 4:15 || QDEC demonstration || demo || Nick Schmansky || qdec ||
|| 4:15 - 4:30 || '''break''' || || || ||
|| 4:30 - 5:15 || Multiple Comparisons || talk || Doug Greve || slide ||
|| 5:15 - 6:00 || Group Analysis Interactive Tutorial || tutorial || staff || [[FsTutorial/Qdec]] ||
|| 6:00 - || !FreeSurfer Installation on Personal Laptops (optional) || one-on-one || Nick Schmansky || [[fswiki]] ||
|| 6:00 - || Start Processing Your Own Data (optional) || one-on-one || Allison Stevens || ||
+|| '''Time''' || '''Title''' || '''Type''' || '''Lecturer''' ||
|| 8:00 - 9:00 || Course Registration || sign-in || staff ||
|| 8:00 - 8:30 || '''optional -''' Unix Tutorial for !FreeSurfer [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]]  || tutorial || Allison Stevens ||
|| 9:00 - 9:20 || [[attachment:freesurfer.intro.2009.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl ||
|| 9:20 - 10:00 || !FreeSurfer Applications || talk || David Salat ||
|| 10:00 - 10:30 || Reliability/Validation of !FreeSurfer || talk || David Salat ||
|| 10:30 - 10:45 || '''break''' || || ||
|| 10:45 - 11:45 || [[attachment:freesurfer.recon.2007.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Doug Greve ||
|| 11:45 - 12:30 || '''lunch''' || || Obama ||
|| 12:30 - 1:00  || Tkmedit/Tksurfer demonstration || demo || Doug Greve ||
|| 1:00 - 1:30 || [[FsTutorial/OutputData|Interaction with Individual Subject Data]] || tutorial || staff ||
|| 1:30 - 2:45 || [[attachment:freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Doug Greve ||
|| 2:45 - 3:00 || QDEC demonstration || demo || Nick Schmansky ||
|| 3:00 - 3:15 || '''break''' || || ||
|| 3:15 - 4:15 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit]] || tutorial || staff ||
|| 4:15 - 5:00 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec]] || tutorial || staff ||
|| 5:00 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky  ||
|| 5:00 - || '''optional -''' Start Processing Your Own Data || one-on-one || Allison Stevens ||
-Line 21:
+Line 24:
-=== Wednesday January 20: Working with Various Data Types ===
+=== Wednesday, January 21st - ROIs / Troubleshooting / Multi-Modal / QA / Future Directions ===
-Line 23:
+Line 26:
-|| 9:00 - 10:00 || Registration for Multi-Modal Integration ||
 * Working with fMRI and Diffusion Data
 * Working with Different Format Types
 * Segmentation/ROI Analysis
 * Working with !FreeSurfer Stats
 * Surface-Based Multi-Modal Analysis
 * Bug Reporting
 * Question and Answer Session
 * Future Directions of !FreeSurfer
  * Inferring architectonic boundaries from in-vivo MRI - Bruce Fischl
  * Combined Volume and Surface Registration - Lilla Zollei
  * Tractography of Underlying Anatomy (TRACULA) - Anastasia Yendiki
+|| '''Time''' || '''Title''' || '''Type''' || '''Lecturer''' ||
|| 9:00 - 9:45 || [[attachment:fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve ||
|| 9:45 - 10:45 || [[FsTutorial/AnatomicalROI|ROI Analysis]] || tutorial || staff ||
|| 10:45 - 11:00 || '''break''' || || ||
|| 11:00 - 11:15 || [[attachment:freesurfer.failure_modes.2009.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl||
|| 11:15 - 12:15 || [[FsTutorial/TroubleshootingData|Troubleshooting]] || tutorial || staff ||
|| 12:15 - 1:00 || '''lunch''' || || ||
|| 1:00 - 2:15 || [[attachment:fs.multimodal-integration.ppt|Multi-Modal Integration: ROI and Surface-based Analysis|&do=get]] || talk || Doug Greve ||
|| 2:15 - 3:15 || [[FsTutorial/MultiModal|Multi-Modal Integration]] || tutorial || staff ||
|| 3:15 - 3:30 || '''break''' || || ||
|| 3:30 - 4:30 || Question and Answer Session || talk || staff ||
|| 4:30 - 6:00 || Future Directions of !FreeSurfer: || || ||
|| 4:30 - 5:00 || [[attachment:freesurfer.inferring_architectonics.2009.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||
|| 5:00 - 5:20 || [[attachment:CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei ||
|| 5:20 - 5:40 || TRActs Constrained on !UnderLying Anatomy (TRACULA) || talk || Anastasia Yendiki ||
|| 5:40 - 6:00 || [[attachment:HippocampalSubfields-Koen.ppt|Automated segmentation of hippocampal subfields|&do=get]] || talk || Koen Van Leemput ||