Tuesday, January 20th - Introduction to FreeSurfer
Time |
Title |
Type |
Lecturer |
Corresponding Materials |
To Do/Topics covered |
8:00 - 8:30 |
Unix Tutorial (optional) |
tutorial |
Allison Stevens |
http://www.ee.surrey.ac.uk/Teaching/Unix/ http://docstore.mik.ua/orelly/linux/lnut/index.htm |
|
8:30 - 9:00 |
Course Registration |
sign-in |
staff |
-- |
binders with slides? relevant papers? nametags |
9:00 - 10:45 |
Introduction to FreeSurfer |
talk |
Bruce Fischl |
slide |
|
10:30 - 11:30 |
FreeSurfer Applications |
talk |
David Salat |
slide |
|
11:30 - 12:00 |
Reliability/Validation of FreeSurfer |
talk |
David Salat |
slide |
|
12:00 - 1:00 |
lunch |
|
|
|
|
1:00 - 2:00 |
Analyzing the Individual Subject |
talk |
Doug Greve |
slide |
|
1:00 - 2:00 |
Tkmedit/Tksurfer demonstration |
demo |
Doug Greve |
tkmedit,tksurfer |
|
2:00 - 3:00 |
Interaction with Individual Subject Data |
tutorial |
staff |
|
|
3:00 - 4:00 |
Group Analysis/GLM |
talk |
Doug Greve |
slide |
|
4:00 - 4:15 |
QDEC demonstration |
demo |
Nick Schmansky |
qdec |
|
4:15 - 4:30 |
break |
|
|
|
|
4:30 - 5:15 |
Multiple Comparisons |
talk |
Doug Greve |
slide |
|
5:15 - 6:00 |
Group Analysis Interactive Tutorial |
tutorial |
staff |
|
|
6:00 - |
FreeSurfer Installation on Personal Laptops (optional) |
one-on-one |
Nick Schmansky |
|
|
6:00 - |
Start Processing Your Own Data (optional) |
one-on-one |
Allison Stevens |
|
|
Wednesday January 21 - Working with Data
9:00 - 10:00 |
Registration for Multi-Modal Integration |
talk |
Doug Greve |
slide |
|
10:00 - 11:00 |
Working with fMRI and Diffusion Data |
talk |
Doug Greve |
slide |
|
11:00 - 12:00 |
Working with Different Format Types |
talk |
Doug Greve |
slide |
|
12:00 - 1:00 |
lunch |
|
|
|
|
1:00 - 2:00 |
Segmentation/ROI Analysis |
talk |
Doug Greve |
slide |
|
2:00 - 2:30 |
Working with FreeSurfer Stats |
talk |
Doug Greve |
slide |
|
2:30 - 3:00 |
Surface-Based Multi-Modal Analysis |
talk |
Doug Greve |
slide |
|
3:00 - 3:15 |
Bug Reporting |
talk |
Doug Greve |
slide |
|
3:15 - 3:30 |
break |
|
|
|
|
3:30 - 4:30 |
Question and Answer Session |
talk |
staff |
slide |
|
4:30 - 6:00 |
Future Directions of FreeSurfer: |
|
|
|
|
|
Inferring architectonic boundaries from in-vivo MRI |
talk |
Bruce Fischl |
slide |
|
|
Combined Volume and Surface Registration |
talk |
Lilla Zollei |
slide |
|
|
Tractography of Underlying Anatomy (TRACULA) |
talk |
Anastasia Yendiki |
slide |