FreeSurfer Course, June 28-29

Tuesday,June 28th - Introduction / Single Subject Analysis / ROI Analysis

Time

Title

Type

Lecturer

8:30 - 9:00

** Intro to Linux for FreeSurfer Users

talk/tutorial

Lee Tirrell

9:00 - 9:15

** Intro to FreeSurfer Jargon

talk

Lee Tirrell

9:15 - 9:45

** A Non-physicist's Intro to MR (SpinBench)

talk

Lee Tirrell

9:45 - 10:00

break

10:00 - 10:30

Introduction to Freesurfer

talk

Lee Tirrell

10:30 - 11:40

Analyzing the Individual Subject

talk

11:40 - 12:00

Freeview demonstration

demo

12:00 - 1:00

Lunch (Suggestions for where to eat)

--

--

1:00 - 2:00

Interaction with Individual Subject Data Tutorial

tutorial

staff

2:00 - 2:30

* MRI Acquisition Methods

talk

2:30 - 2:50

break

2:50 - 3:20

Surface-based Analysis: Intersubject Registration & Smoothing

talk

3:20 - 3:50

ROI Analysis

talk

3:50 - 4:40

ROI Analysis Tutorial

tutorial

6:15 - ?

Boston Beer Works

social activity

Answers to online questions here

Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:15pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street.
Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).

Tuesday, April 5th - Group Analysis / Longitudinal Analysis / Multimodal Analysis

Time

Title

Type

Lecturer

9:00 - 9:30

** Basics of Group Analysis

talk

Emily Lindemer

9:30 - 10:10

Group Analysis

talk

Emily Lindemer

10:10 - 10:30

break

10:30 - 11:10

Group Analysis Tutorial

tutorial

staff

11:10 - 11:30

Multiple Comparisons

talk

Emily Lindemer

11:30 - 11:50

Multiple Comparisons Tutorial

tutorial

staff

11:50 - 12:50

Lunch

--

--

12:50 - 1:10

QDEC demonstration

demo

Martin Reuter

1:10 - 1:50

QDEC Tutorial

tutorial

staff

1:50 - 2:35

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

2:35 - 2:55

break

2:55 - 3:35

Longitudinal Tutorial

tutorial

staff

3:35 - 4:05

Multi-Modal Integration, Part 1

talk

Lilla Zollei

4:05 - 4:30

Multi-Modal Integration Tutorial: Multimodal Registration

tutorial

staff

4:30 - 5:10

* An Overview of Registration Methods

talk

Lilla Zollei

Answers to online questions here

Wednesday, April 6th - Diffusion Analysis / fMRI Analysis

Time

Title

Type

Lecturer

9:00 - 9:15

** A Non-Physicist's Intro to Diffusion MRI Physics

talk

Dylan Tisdall

9:15 - 10:00

Introduction to Diffusion MRI

talk

Anastasia Yendiki

10:00 - 10:40

Diffusion Processing Tutorial

tutorial

staff

10:40 - 11:00

break

11:00 - 11:40

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

11:40 - 12:00

Tracula Tutorial

tutorial

staff

12:00 - 1:00

Lunch

--

--

1:00 - 1:30

Tracula Tutorial

tutorial

staff

1:30 - 1:40

Longitudinal TRACULA

talk

Anastasia Yendiki

1:40 - 1:55

break

1:55 - 2:55

Basics of fMRI Analysis

talk

Jon Polimeni

2:55 - 3:35

FSFAST

talk

Doug Greve

3:35 - 3:50

break

3:50 - 4:30

FSFAST

talk

Doug Greve

4:30 - 5:30

FSFAST Tutorial

tutorial

staff

Answers to online questions here

Thursday, April 7th - Multimodal Analysis / Troubleshooting / Future Directions

Time

Title

Type

Lecturer

8:30 - 9:00

* Motion-compensated Neuroanatomical Imaging

talk

Dylan Tisdall

9:00 - 9:30

Multi-Modal Integration, Part 2

talk

Doug Greve

9:30 - 10:00

Multi-Modal Integration Tutorial: fMRI Integration & Surface-based Group fMRI Analysis

tutorial

staff

10:00 - 10:30

FreeSurfer Troubleshooting

talk

Bruce Fischl

10:30 - 11:00

break & Evaluation

11:00 - 12:00

Troubleshooting Tutorial

tutorial

staff

12:00 - 1:00

Lunch

--

--

1:00 - 2:00

Quality Checking a Recon

demo

Allison Moreau

2:00 - 2:50

Future Directions

talk

Bruce Fischl

2:50 - 3:00

Question & Answer session

--

staff

Answers to online questions here

* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk covering basic/beginner material.

FsTutorial/June2016GeorgetownCourseSchedule (last edited 2017-09-26 11:40:20 by MorganFogarty)