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Below is a picture of how the long for MR1 looked originally: |
Below is a picture of how the long for MR1 looked originally: Sample Slice 92 in brain.finalsurfs.mgz, coordinates: <<BR>> {{attachment:mr1longbefore.jpg}} And here it is zoomed in: <<BR>> {{attachment:mr1longbeforezoom.jpg}} After edits to the cross and base have been done for each timepoint, the following commands should be run to create new long data sets: {{{ recon-all -all -long OAS2_0002_MR1 OAS2_0002 }}} {{{ recon-all -all -long OAS2_0002_MR2 OAS2_0002 }}} The results of re-running appear as follows: {{{ tkmedit OAS2_0002_MR1.long.OAS2_0002_fixed brainmask.mgz -aux brain.finalsurfs.mgz -surfs tkmedit OAS2_0002_MR2.long.OAS2_0002_fixed brainmask.mgz -aux brain.finalsurfs.mgz -surfs }}} The following shows pictures of sample slice 92 from OAS2_0002_MR1.long.OAS2_0002_fixed in the brain.finalsurfs.mgz volume at coordinates: |
Below is a picture of how the long for MR1 looked originally: Sample Slice 92 in brain.finalsurfs.mgz, coordinates:
And here it is zoomed in:
After edits to the cross and base have been done for each timepoint, the following commands should be run to create new long data sets:
recon-all -all -long OAS2_0002_MR1 OAS2_0002
recon-all -all -long OAS2_0002_MR2 OAS2_0002
The results of re-running appear as follows:
tkmedit OAS2_0002_MR1.long.OAS2_0002_fixed brainmask.mgz -aux brain.finalsurfs.mgz -surfs tkmedit OAS2_0002_MR2.long.OAS2_0002_fixed brainmask.mgz -aux brain.finalsurfs.mgz -surfs
The following shows pictures of sample slice 92 from OAS2_0002_MR1.long.OAS2_0002_fixed in the brain.finalsurfs.mgz volume at coordinates: