Below is a picture of how the long for MR1 looked originally: Sample Slice 92 in brain.finalsurfs.mgz, coordinates:
And here it is zoomed in:
After edits to the cross and base have been done for each timepoint, the following commands should be run to create new long data sets:
recon-all -all -long OAS2_0002_MR1 OAS2_0002
recon-all -all -long OAS2_0002_MR2 OAS2_0002
The results of re-running appear as follows:
tkmedit OAS2_0002_MR1.long.OAS2_0002_fixed brainmask.mgz -aux brain.finalsurfs.mgz -surfs tkmedit OAS2_0002_MR2.long.OAS2_0002_fixed brainmask.mgz -aux brain.finalsurfs.mgz -surfs
The following shows pictures of sample slice 92 from OAS2_0002_MR1.long.OAS2_0002_fixed in the brain.finalsurfs.mgz volume at coordinates:
zoomed in, we have:
mr1longfixedzoom