#acl LcnGroup:read,write,delete,revert All:read
'''!FreeSurfer Course, April 29 - May 1, 2013 <
>
MGH, Charlestown Navy Yard, Building 114, Room D1'''
'''Fill out the Course evaluation [[ https://docs.google.com/spreadsheet/viewform?formkey=dF9vNnlCUHVuQ1BsUmREdDRwVnBHS0E6MA|here]]!!!'''
=== Monday, April 29th - Introduction / Single Subject / Registration / Troubleshooting ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial || Maritza Ebling ||
||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk || Melanie Ganz ||
||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Doug Greve ||
||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Doug Greve ||
||10:30 - 10:50 ||'''break''' || || ||
||10:50 - 11:10 ||Freeview/Tksurfer demonstration ||demo ||Doug Greve ||
||11:10 - 11:40 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||11:40 - 12:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve ||
||12:20 - 1:20 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg| (Suggestions for where to eat)]]||-- ||-- ||
||''12:35 - 1:20'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' ||
||1:20 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.AS.ppt|FreeSurfer Troubleshooting|&do=get]] ||talk ||David Salat ||
||2:00 - 3:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||David Salat ||
||3:00 - 3:20 ||'''break''' || || ||
||3:20 - 3:40 ||Troubleshooting Demonstration || demo || Louis Vinke ||
||3:40 - 4:40 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
##||5:00 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one || staff || ||
##||5:00 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff || ||
=== Tuesday, April 30th - ROIs / Longitudinal / Multimodal / Group Analysis ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||
||9:40 - 10:10 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||10:10 - 10:30 ||'''break''' || ||
||10:30 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk || Melanie Ganz ||
||11:30 - 11:50 ||QDEC demonstration ||demo ||Nick Schmansky ||
||11:50 - 12:50 ||'''Lunch''' ||-- ||-- ||
||''12:20 - 12:50'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' ||
||12:50 - 1:50 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||12:50 - 1:50 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||1:50 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter ||
||2:20 - 2:40 ||'''break''' || ||
||2:40 - 3:40 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||
||3:40 - 4:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve ||
||4:40 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei ||
||5:00 - 5:45 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||
'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<
>
Meet us at 6:10pm at the front of Building 149 (map to be provided soon). <
>
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
<
>From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.
=== Wednesday, May 1st - fMRI / Diffusion / Q&A ===
[[ https://docs.google.com/spreadsheet/viewform?formkey=dF9vNnlCUHVuQ1BsUmREdDRwVnBHS0E6MA |The Course Evaluation has been posted. ]] Please feel free to start filling it out!
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis|&do=get]] ||talk || Jon Polimeni ||
||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve ||
||10:40 - 11:00 ||'''break''' || ||
||11:00 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] continued ||talk ||Doug Greve ||
||11:40 - 12:40 ||[[FsFastTutorialV5.1|FSFAST Tutorial]] ||tutorial ||staff ||
||12:40 - 1:40 ||'''Lunch''' ||-- ||-- ||
||''1:10 - 1:40'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' ||
||1:40 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki ||
||2:20 - 2:50 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||
||2:50 - 3:10 ||'''break''' & [[ https://docs.google.com/spreadsheet/viewform?formkey=dF9vNnlCUHVuQ1BsUmREdDRwVnBHS0E6MA|Evaluation]] || ||
||3:10 - 3:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki ||
||3:40 - 4:25 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||4:25 - 5:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSuferCourse_OCT.pdf|Future Directions - Optical Coherence Tomography]] ||talk || Caroline Magnain ||
||5:00 - 5:30 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff ||
'''The !FreeSurfer Evaluation is [[ https://docs.google.com/spreadsheet/viewform?formkey=dF9vNnlCUHVuQ1BsUmREdDRwVnBHS0E6MA|here]]!'''