#acl LcnGroup:read,write,delete,revert All:read
== Multimodal Short Course, FreeSurfer/FS-FAST, May 2 & 3, 2016 ==
=== MGH- Charlestown Navy Yard ===
 * [[http://www.nmr.mgh.harvard.edu/martinos/training/multimodalImaging.php|Multi Modal Short Course]]

=== Monday, May 2 - Single Subject Analysis / Surface-based Smoothing and Registration / Group Analysis / Troubleshooting ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer.intro.mmclass.ppt|Introduction to Freesurfer]] ||talk ||Doug Greve ||
||9:30 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve ||
||10:40 - 11:00 ||'''break''' || || ||
||11:00 - 11:20 ||Freeview demonstration ||demo ||Allison Moreau ||
||11:20 - 12:20 ||[[FsTutorial/OutputData_freeview|Inspection of Freesurfer Output]] ||tutorial ||staff ||
||12:20 - 1:20 ||'''lunch''' || || ||
||1:20 - 1:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration]] ||talk ||Iman Aganj ||
||1:50 - 2:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer_failuremodes_ALM.ppt|Troubleshooting]] ||talk ||Allison Moreau ||
||2:20 - 2:50 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||
||2:50 - 3:10 ||'''break''' || || ||
||3:10 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer.groupanalysis.ppt|Group Analysis / GLM]] ||talk ||Martin Reuter ||
||3:50 - 4:35 ||[[FsTutorial/GroupAnalysis|Group Analysis - mri_glmfit]] ||tutorial ||staff ||
||4:35 - 4:55 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2015/freesurfer.multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Doug Greve ||
||4:55 - 5:15 ||QDEC demonstration ||demo ||Martin Reuter ||
||5:15 - 6:00 ||[[FsTutorial/QdecGroupAnalysis_freeview|Group Analysis - qdec]] ||tutorial ||staff ||




=== Tuesday, May 3 - FS-FAST ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||2:00 - 3:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fmri.april2011.ppt|Basics of fMRI Analysis]] ||talk ||Doug Greve ||
||3:15 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fsfast.april2011.ppt|Functional Analysis with FS-FAST]] ||talk ||Doug Greve ||
||4:00 - 4:15 ||'''break''' || || ||
||4:15 - 5:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/MultiModalShort2014/fsfast.april2011.ppt|Functional Analysis with FS-FAST, continued]] ||talk ||Doug Greve ||
||5:00 - 6:00 ||[[FsFastTutorialV5.1_freeview|FS-FAST Tutorial]] ||tutorial ||staff ||




== Additional Useful Information ==
=== During the Course ===
 * [[FsTutorial/Data|Getting the tutorial data]] (necessary only if you are not taking a formal course where data is provided) '''DO NOT attempt this during a course!''' Contact a staff member for instructions on how to get this data locally during the course.
 * Using a Mac & need a text editor? Download gedit, [[http://ftp.gnome.org/pub/GNOME/binaries/mac/gedit/3.2/gedit-3.2.6-3_SnowLeopard_64bit.dmg|here]].
 * [[FsTutorial/Scripts|Scripts & aliases]]
 * [[FsTutorial/Glossary|Glossary]]
## * '''Taxi''' phone numbers can be found [[http://www.cityofboston.gov/police/hackney/companies.asp|here]].


=== After the Course ===
 * Home page: http://surfer.nmr.mgh.harvard.edu
 * [[https://www.zotero.org/freesurfer|Publications]]
 * Mailing list: send mail to majordomo@surfer.nmr.mgh.harvard.edu with the following command in the body of your email message: subscribe freesurfer
 * How to cite !FreeSurfer is on the FreeSurferMethodsCitation page.
 * [[SystemRequirements|System Requirements for Installation]]
 * [[http://itunes.apple.com/us/app/isurf-brainview/id381072423?mt=8|iSurf]] - iPhone/iPad app to view !FreeSurfer segmentations
## * [[FsTutorial/SnapShot|PDF and HTML snapshot]]
## * 4pp PDFs: [[attachment:intro4pp.pdf]], [[attachment:recon4pp.pdf]], [[attachment:group4pp.pdf]] [[attachment:feat4pp.pdf]]
 * [[FsTutorial/Acknowledgements|Acknowledgements]]
## * [[ConferenceRoomA| Conference Room A]]
## * [[FsTutorial/CourseChecklist| Course checklist (internal)]]
## * [[FsTutorial/Exercises|Listing of all exercises]]
## * [[FsTutorial/Tools|FreeSurfer tools]]