| Deletions are marked like this. | Additions are marked like this. |
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| # cmdline mri_segstats --seg /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc.mgz --ctab /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.anat.mgh --sum fa.stats | # cmdline mri_segstats --seg /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz --ctab /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.nii --sum fa.stats |
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| # hostname localzekes-mbp.partners.org | # hostname breck |
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# SegVolFile /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc.mgz # SegVolFileTimeStamp 2015/04/08 14:41:59 |
# SegVolFile /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz # SegVolFileTimeStamp 2016/09/27 17:35:42 |
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# InVolFile fa.anat.mgh # InVolFileTimeStamp 2016/03/30 16:00:57 |
# InVolFile fa.nii # InVolFileTimeStamp 2015/04/08 14:42:49 |
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| # VoxelVolume_mm3 1 | # VoxelVolume_mm3 8 |
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1 251 1142 1142.0 CC_Posterior 0.6097 0.2009 0.1089 1.0476 0.9387 2 3021 2705 2705.0 wm-lh-pericalcarine 0.2609 0.1110 0.0431 0.6919 0.6488 3 3024 14619 14619.0 wm-lh-precentral 0.3758 0.1267 0.0381 0.8125 0.7745 4 3030 8511 8511.0 wm-lh-superiortemporal 0.3943 0.1108 0.0381 0.9062 0.8681 5 12 5005 5005.0 Left-Putamen 0.2591 0.1035 0.0596 0.6036 0.5440 6 4 7796 7796.0 Left-Lateral-Ventricle 0.1352 0.1201 0.0201 0.9527 0.9325 |
1 251 114 912.0 CC_Posterior 0.6130 0.2308 0.0946 1.0749 0.9803 2 3021 347 2776.0 wm-lh-pericalcarine 0.2702 0.1309 0.0181 0.7177 0.6996 3 3024 1840 14720.0 wm-lh-precentral 0.3853 0.1491 0.0285 0.9488 0.9203 4 3030 1054 8432.0 wm-lh-superiortemporal 0.4126 0.1256 0.0213 1.1030 1.0817 5 12 622 4976.0 Left-Putamen 0.2535 0.1183 0.0469 0.6283 0.5814 6 4 992 7936.0 Left-Lateral-Ventricle 0.1229 0.1394 0.0108 1.1163 1.1055 |
Return to Diffusion and DTI Integration |
Contents of $TUTORIAL_DATA/diffusion_tutorial/Diff001/dtrecon/fa.stats
# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.120 2016/03/02 22:30:05 greve Exp $ # cmdline mri_segstats --seg /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz --ctab /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt --id 251 --id 3021 --id 3024 --id 3030 --id 12 --id 4 --i fa.nii --sum fa.stats # sysname Darwin # hostname breck # machine x86_64 # user nmrclass # anatomy_type volume # # SegVolFile /Users/nmrclass/freesurfer/subjects/tutorial_data/diffusion_recons/Diff001/mri/wmparc2diff.mgz # SegVolFileTimeStamp 2016/09/27 17:35:42 # ColorTable /Users/nmrclass/freesurfer/FreeSurferColorLUT.txt # ColorTableTimeStamp 2016/03/23 03:23:09 # InVolFile fa.nii # InVolFileTimeStamp 2015/04/08 14:42:49 # InVolFrame 0 # Only reporting non-empty segmentations # VoxelVolume_mm3 8 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader Mean # TableCol 6 FieldName Intensity Mean # TableCol 6 Units unknown # TableCol 7 ColHeader StdDev # TableCol 7 FieldName Itensity StdDev # TableCol 7 Units unknown # TableCol 8 ColHeader Min # TableCol 8 FieldName Intensity Min # TableCol 8 Units unknown # TableCol 9 ColHeader Max # TableCol 9 FieldName Intensity Max # TableCol 9 Units unknown # TableCol 10 ColHeader Range # TableCol 10 FieldName Intensity Range # TableCol 10 Units unknown # NRows 6 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range 1 251 114 912.0 CC_Posterior 0.6130 0.2308 0.0946 1.0749 0.9803 2 3021 347 2776.0 wm-lh-pericalcarine 0.2702 0.1309 0.0181 0.7177 0.6996 3 3024 1840 14720.0 wm-lh-precentral 0.3853 0.1491 0.0285 0.9488 0.9203 4 3030 1054 8432.0 wm-lh-superiortemporal 0.4126 0.1256 0.0213 1.1030 1.0817 5 12 622 4976.0 Left-Putamen 0.2535 0.1183 0.0469 0.6283 0.5814 6 4 992 7936.0 Left-Lateral-Ventricle 0.1229 0.1394 0.0108 1.1163 1.1055