Differences between revisions 4 and 6 (spanning 2 versions)
Revision 4 as of 2017-02-10 19:44:23
Size: 2195
Editor: AndrewHoopes
Comment: replaced for 6.0
Revision 6 as of 2017-03-23 13:29:02
Size: 1965
Editor: AndrewHoopes
Comment:
Deletions are marked like this. Additions are marked like this.
Line 1: Line 1:
Describe FsTutorial/MultiModalRegistration/RegisterFileLta here.
Line 5: Line 3:
# created by nmrclass on Fri Feb 10 18:37:21 2017 # created by XYZ on Tue May 6 10:42:24 2014
Line 7: Line 5:
type = 0 # LINEAR_VOX_TO_VOX type = 0
Line 12: Line 10:
3.431372642517090e+00 -2.051215618848801e-01 -4.745870828628540e-03 2.7534584045
41016e+01
4.565358161926270e-03 1.446578502655029e-01 -3.996454238891602e+00 1.58296142578
1250e+02
-2.051111757755280e-01 -3.428324222564697e+00 -1.683440804481506e-01 2.647823486
328125e+02
0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 1.000000000000
000e+00
3.431423187255859e+00 -2.041964828968048e-01 -7.740691304206848e-03 2.756774902343750e+01
2.015136182308197e-03 1.456980705261230e-01 -3.996406793594360e+00 1.583389892578125e+02
-2.042964249849319e-01 -3.428334712982178e+00 -1.693789362907410e-01 2.647491455078125e+02
0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 1.000000000000000e+00
Line 22: Line 16:
filename = /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/multimodal/f
mri/fbirn-101/template.nii
filename = TEMPLATE_FILE_PATH/template.nii
Line 32: Line 25:
filename = /home/nmrclass/tutorial_data/buckner_data/tutorial_subjs/fbirn-anat-1
01.v4/mri/orig.mgz
filename = SUBJECT_FILE_PATH/orig.mgz
Line 41: Line 33:
fscale 0.100000 fscale 0.150000

# transform file register.lta
# created by XYZ on Tue May  6 10:42:24 2014

type      = 0
nxforms   = 1
mean      = 0.0000 0.0000 0.0000
sigma     = 10000.0000
1 4 4
3.431423187255859e+00 -2.041964828968048e-01 -7.740691304206848e-03 2.756774902343750e+01 
2.015136182308197e-03 1.456980705261230e-01 -3.996406793594360e+00 1.583389892578125e+02 
-2.042964249849319e-01 -3.428334712982178e+00 -1.693789362907410e-01 2.647491455078125e+02 
0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 1.000000000000000e+00 
src volume info
valid = 1  # volume info valid
filename = TEMPLATE_FILE_PATH/template.nii
volume = 64 64 35
voxelsize = 3.437500000000000e+00 3.437499761581421e+00 4.000000000000000e+00
xras   = -9.972996711730957e-01 -7.120382040739059e-02 1.798351481556892e-02
yras   = 6.254287064075470e-02 -9.518167972564697e-01 -3.002218902111053e-01
zras   = 3.849399834871292e-02 -2.982859909534454e-01 9.537000060081482e-01
cras   = 1.612358093261719e+00 1.616348266601562e+00 4.727973937988281e+00
dst volume info
valid = 1  # volume info valid
filename = SUBJECT_FILE_PATH/orig.mgz
volume = 256 256 256
voxelsize = 1.000000000000000e+00 1.000000000000000e+00 1.000000000000000e+00
xras   = -1.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00
yras   = 0.000000000000000e+00 0.000000000000000e+00 -1.000000000000000e+00
zras   = 0.000000000000000e+00 1.000000000000000e+00 0.000000000000000e+00
cras   = 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00
subject fbirn-anat-101.v4
fscale 0.150000

The matrix (starting with 3.4375 ...) is the registration matrix. xras is the direction cosines for the column direction (in scanner RAS coordinates). yras and zras are the direction cosines for the row and slice directions. cras is the center of the volume in RAS coordinates. The first set of parameters is for the source volume. The second set is for the target volume.

FsTutorial/MultiModalRegistration/RegisterFileLta (last edited 2017-03-23 13:29:02 by AndrewHoopes)