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=== FreeSurfer Course, October 4 and 5, 2010 ===
=== MGH, Charlestown Navy Yard, Building 149, Conference Room A ===
=== Monday, October 4th - Introduction / Single Subject / Group Analysis ===

|| '''Time''' || '''Title''' || '''Type''' || '''Lecturer''' ||
|| 8:00 - 8:30 || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users|&do=get]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]]  || tutorial || Allison Stevens ||
|| 8:30 - 9:00 || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] || talk || Allison Stevens ||
|| 8:30 - 9:00 || '''Course Registration''' || sign-in || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/boston_fs_course_jan2009.jpg|staff|&do=get]] ||
|| 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl ||
|| 9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat ||
|| 10:00 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk || Doug Greve ||
|| 11:00 - 11:15 || '''break''' || || ||
|| 11:15 - 11:45  || Tkmedit/Tksurfer demonstration || demo || Doug Greve ||
|| 11:45 - 12:15 || [[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] || tutorial || staff ||
|| 12:15 - 1:15 || '''Lunch''' || -- || -- ||
|| ''12:30 - 1:00'' || ''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' || ''talk'' || ''Andre van der Kouwe''||
|| 1:15 - 2:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat ||
|| 2:00 - 2:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve ||
|| 2:30 - 2:45 || '''break''' || || ||
|| 2:45 - 3:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu ||
|| 3:30 - 4:30 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] || tutorial || staff ||
|| 4:30 - 4:45 || QDEC demonstration || demo || Nick Schmansky ||
|| 4:45 - 5:30 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] || tutorial || staff ||
|| 5:30 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky  ||
|| 5:30 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens ||

'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]].'''<<BR>>
Meet us at 6:10pm at the front of Building 149 (the entrance on the opposite side of the building from where the Course is held). <<BR>>
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station. From there, you cross the street and go down Canal Street. Boston Beer Works will be on your left.

=== Tuesday, October 5th - ROIs / Troubleshooting / Multi-Modal / Q&A / Future Directions ===

|| '''Time''' || '''Title''' || '''Type''' || '''Lecturer''' ||
|| 9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve ||
|| 10:00 - 10:30 || [[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] || tutorial || staff ||
|| 10:30 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing|| talk || Martin Reuter ||
|| 11:00 - 11:15 || '''break''' || || ||
|| 11:15 - 11:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl||
|| 11:45 - 12:45 || Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]]|| tutorial || staff, Allison ||
|| 12:45 - 1:45 || '''Lunch''' || -- || -- ||
|| ''12:45 - 1:15'' || ''Optional Lunch Talk- [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon|&do=get]]'' || ''demo'' || ''Allison Stevens'' ||
|| 1:45 - 3:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Doug Greve ||
|| 3:00 - 3:45 || [[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] || tutorial || staff ||
|| 3:45 - 4:00 || '''break''' || || ||
|| 4:00 - 4:20 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei ||
|| 4:20 - 5:30 || Future Directions of !FreeSurfer: || || ||
|| 4:20 - 4:40|| [[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging|&do=get]] || talk || Dylan Tisdall ||
|| 4:40 - 5:10 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl ||
|| 5:10- 5:30|| [[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Lilla Zollei ||
|| 5:30 - 6:00 || Question and Answer Session, FsQuiz............FsQuizAnswers || talk || staff ||

'''The !FreeSurfer Evaluation is [[https://spreadsheets.google.com/viewform?formkey=dHM0ZWFSY0owUVoyQmpMR3NTWUt2SHc6MA|here]]!'''