Diff for "FsTutorial/Sept2015CourseSchedule"

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FreeSurfer Course, September 28 - Oct 1

Answers to online questions here

7:30 - 9:30am Registration Desk Open

Monday, September 28th - Introduction / Single Subject Analysis / Troubleshooting

Time	Title	Type	Lecturer
8:30 - 9:00	optional - Unix Tutorial for FreeSurfer Users	talk/tutorial	Allison Moreau
9:00 - 9:15	optional - Intro to FreeSurfer Jargon	talk	Allison Moreau & Lilla Zollei
9:15 - 9:30	break
9:30 - 10:00	Introduction to Freesurfer	talk	Bruce Fischl
10:00 - 11:10	Analyzing the Individual Subject	talk	Doug Greve
11:10 - 11:30	break
11:30 - 12:10	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Doug Greve
12:10 - 1:10	Lunch (Suggestions for where to eat)	--	--
1:10 - 1:40	optional - A Non-physicist's Intro to MR SpinBench	talk	Dylan Tisdall
1:40 - 2:00	Freeview demonstration	demo	Lee Tirrell
2:00 - 3:00	Interaction with Individual Subject Data Tutorial	tutorial	staff
3:00 - 3:20	break
3:20 - 3:50	FreeSurfer Troubleshooting	talk	Bruce Fischl
3:50 - 4:30	Quality Checking a Recon	demo	Ani Varjabedian

Tuesday, September 29th - Group Analysis / Longitudinal Analysis / ROI Analysis

Time	Title	Type	Lecturer
9:00 - 10:00	Troubleshooting Tutorial	tutorial	staff
10:00 - 10:40	Group Analysis	talk	Emily Lindemer
10:40 - 11:00	break
11:00 - 11:40	Group Analysis Tutorial	tutorial	staff
11:40 - 12:00	Multiple Comparisons	talk	Martin Reuter
12:00 - 1:00	Lunch	--	--
1:00 - 1:20	Multiple Comparisons Tutorial	tutorial	staff
1:20 - 1:40	QDEC demonstration	demo	Martin Reuter
1:40 - 2:20	QDEC Tutorial	tutorial	staff
2:20 - 2:40	break
2:40 - 3:10	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
3:10 - 3:50	Longitudinal Tutorial	tutorial	staff
3:50 - 4:00	break
4:00 - 4:30	ROI Analysis	talk	Doug Greve
4:30 - 5:00	ROI Analysis Tutorial	tutorial	staff

Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:15pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. Boston Beer Works will be down that street, on your right. (If you miss the 6:15 bus, the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).

Wednesday, September 30th - fMRI / Diffusion

Time	Title	Type	Lecturer
9:00 - 9:30	Multi-Modal Integration, Part 1	talk	Doug Greve
9:30 - 10:10	Introduction to Diffusion MRI	talk	Anastasia Yendiki
10:10 - 10:30	break
10:30 - 11:20	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
11:20 - 12:05	Tracula Tutorial	tutorial	staff
12:05 - 1:05	Lunch	--	--
1:05 - 1:20	optional - Diffusion Weighting in MR	talk	Dylan Tisdall
1:20 - 2:20	Basics of fMRI Analysis	talk	Jon Polimeni
2:20 - 2:30	break & Evaluation
2:40 - 4:00	FSFAST	talk	Doug Greve
4:00 - 5:00	FSFAST Tutorial	tutorial	staff

Thursday, October 1st - Troubleshooting / Multimodal Analysis / MRI Acquisition Tips / Future Directions

Time	Title	Type	Lecturer
9:00 - 10:00	optional - Q&A on Quality Checking Recons	Q&A/demo	Allison Stevens & staff
10:00 - 10:30	Multi-Modal Integration, Part 2	talk	Lilla Zollei
10:30 - 10:50	break
10:50 - 11:20	Multi-Modal Integration Tutorial	tutorial	staff
11:20 - 11:50	An Overview of Registration Methods	talk	Lilla Zollei
11:50 - 12:50	Lunch	--	--
12:50 - 1:20	MRI Acquisition Methods	talk	Andre van der Kouwe
1:20 - 1:50	Tech talk - Motion-compensated Neuroanatomical Imaging	talk	Dylan Tisdall
1:50 - 2:00	break
2:00 - 2:30	Future Directions	talk	TBD

FsTutorial/Sept2015CourseSchedule (last edited 2017-09-26 11:31:49 by MorganFogarty)

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-==== Monday, September 28th - Introduction / Single Subject Analysis /Troubleshooting ====
+==== Monday, September 28th - Introduction / Single Subject Analysis / Troubleshooting ====
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-==== Tuesday, September 29th - Diffusion / Group Analysis / ROI Analysis / Longitudinal / fMRI ====
+==== Tuesday, September 29th - Group Analysis / Longitudinal Analysis / ROI Analysis  ====
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-==== Wednesday, September 30th - fMRI / Multimodal /  Diffusion / Future Directions / Q&A ====
+==== Wednesday, September 30th - fMRI / Diffusion  ====
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-==== Thursday, October 1st - Technical talks ====
+==== Thursday, October 1st - Troubleshooting / Multimodal Analysis / MRI Acquisition Tips / Future Directions  ====
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-||11:20 - 11:50 ||'''Tech talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] ||talk ||Lilla Zollei ||
+||11:20 - 11:50 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|An Overview of Registration Methods]] ||talk ||Lilla Zollei ||
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-||12:50 - 1:20 ||'''Tech talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]] ||talk ||Andre van der Kouwe ||

||1:20 - 1:50 ||'''Tech talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging]] ||talk ||Dylan Tisdall ||
+||12:50 - 1:20 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods]] ||talk ||Andre van der Kouwe ||

||1:20 - 1:50 ||'''Tech talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated Neuroanatomical Imaging]] ||talk ||Dylan Tisdall ||