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** Indicates an optional talk covering basic/beginner material. ** Indicates an optional talk covers basic/beginner material.
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'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<<BR>> Meet us in front of [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Building 149]] to catch the 6:15pm shuttle bus (it leaves on time!). <<BR>> If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. <<BR>>Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).
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||9:00 - 9:30 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FS_GLM_Spring2016.ppt|Basics of Group Analysis]] ||talk ||Emily Lindemer ||
||9:30 - 10:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ERL.ppt|Group Analysis]] ||talk ||Emily Lindemer ||
||10:10 - 10:30 ||'''break''' || ||
||10:30 - 11:10 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||11:10 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Emily Lindemer ||
||11:30 - 11:50 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
||9:00 - 9:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/Copenhagen_Group_Analysis.pptx |Group Analysis]] ||talk ||Emily Lindemer ||
||9:50 - 10:30 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||10:30 - 10:50 ||'''break''' || ||
||10:50 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.multiplecomparisons.ppt|Multiple Comparisons]] ||talk ||Emily Lindemer ||
||11:10 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
||11:30 - 11:50 ||QDEC demonstration ||demo ||Doug Greve ||
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||12:50 - 1:10 ||QDEC demonstration ||demo ||Martin Reuter ||
||1:10 - 1:50 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||1:50 -
2:35 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Martin Reuter ||
||12:50 - 1:30 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||1:30 - 2:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Lilla Zollei ||
||2:15 - 2:55 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
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||2:55 - 3:35 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
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'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<<BR>> Meet us in front of [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Building 149]] to catch the 6:15pm shuttle bus (it leaves on time!). <<BR>> If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. <<BR>>Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).

FreeSurfer Course, September 26-29

8:00 - 9:30am Registration Desk Open

* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk covers basic/beginner material.

Monday, September 26th - Introduction / Single Subject Analysis / ROI Analysis

Time

Title

Type

Lecturer

8:30 - 9:00

** Intro to Linux for FreeSurfer Users

talk/demo

Zeke Kaufman

9:00 - 9:15

** Intro to FreeSurfer Jargon

talk

Allison Stevens & Lilla Zollei

9:15 - 9:30

break

9:30 - 10:00

Introduction to Freesurfer

talk

Bruce Fischl

10:00 - 11:10

Analyzing the Individual Subject

talk

Doug Greve

11:10 - 11:30

break

11:30 - 11:45

Freeview demonstration

demo

Allison Moreau

11:45 - 12:15

Interaction with Individual Subject Data Tutorial

tutorial

staff

12:15 - 1:15

Lunch (Suggestions for where to eat)

--

--

1:15 - 1:45

Interaction with Individual Subject Data Tutorial

tutorial

staff

1:45 - 2:15

Surface-based Analysis: Intersubject Registration & Smoothing

talk

Doug Greve

2:15 - 2:35

break

2:35 - 3:05

ROI Analysis

talk

Doug Greve

3:05 - 3:55

ROI Analysis Tutorial

tutorial

staff

3:55 - 4:25

** A Non-physicist's Intro to MR (SpinBench)

talk

Dylan Tisdall

4:25 - 4:55

* MRI Acquisition Methods

talk

Andre van der Kouwe

6:15 - ?

Boston Beer Works

social activity

staff

Answers to online questions here

Tuesday, September 27th - Group Analysis / Longitudinal Analysis / Multimodal Analysis

Time

Title

Type

Lecturer

9:00 - 9:50

Group Analysis

talk

Emily Lindemer

9:50 - 10:30

Group Analysis Tutorial

tutorial

staff

10:30 - 10:50

break

10:50 - 11:10

Multiple Comparisons

talk

Emily Lindemer

11:10 - 11:30

Multiple Comparisons Tutorial

tutorial

staff

11:30 - 11:50

QDEC demonstration

demo

Doug Greve

11:50 - 12:50

Lunch

--

--

12:50 - 1:30

QDEC Tutorial

tutorial

staff

1:30 - 2:15

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Lilla Zollei

2:15 - 2:55

Longitudinal Tutorial

tutorial

staff

2:35 - 2:55

break

3:35 - 4:05

Multi-Modal Integration, Part 1

talk

Lilla Zollei

4:05 - 4:30

Multi-Modal Integration Tutorial: Multimodal Registration

tutorial

staff

4:30 - 5:10

* An Overview of Registration Methods

talk

Lilla Zollei

Answers to online questions here

Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:15pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street.
Boston Beer Works will be down that street, on your right. (Shuttles depart every 15 minutes up until 7:15pm and every half hour after that).

Wednesday, September 28th - Diffusion Analysis / fMRI Analysis

Time

Title

Type

Lecturer

9:00 - 9:15

** A Non-Physicist's Intro to Diffusion MRI Physics

talk

Dylan Tisdall

9:15 - 10:00

Introduction to Diffusion MRI

talk

Anastasia Yendiki

10:00 - 10:40

Diffusion Processing Tutorial

tutorial

staff

10:40 - 11:00

break

11:00 - 11:40

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

11:40 - 12:00

Tracula Tutorial

tutorial

staff

12:00 - 1:00

Lunch

--

--

1:00 - 1:30

Tracula Tutorial

tutorial

staff

1:30 - 1:40

Longitudinal TRACULA

talk

Anastasia Yendiki

1:40 - 1:55

break

1:55 - 2:55

Basics of fMRI Analysis

talk

Jon Polimeni

2:55 - 3:35

FSFAST

talk

Doug Greve

3:35 - 3:50

break

3:50 - 4:30

FSFAST

talk

Doug Greve

4:30 - 5:30

FSFAST Tutorial

tutorial

staff

Answers to online questions here

Thursday, September 29th - Multimodal Analysis / Troubleshooting / Future Directions

Time

Title

Type

Lecturer

8:30 - 9:00

* Motion-compensated Neuroanatomical Imaging

talk

Dylan Tisdall

9:00 - 9:30

Multi-Modal Integration, Part 2

talk

Doug Greve

9:30 - 10:00

Multi-Modal Integration Tutorial: fMRI Integration & Surface-based Group fMRI Analysis

tutorial

staff

10:00 - 10:30

FreeSurfer Troubleshooting

talk

Bruce Fischl

10:30 - 11:00

break & Evaluation

11:00 - 12:00

Troubleshooting Tutorial

tutorial

staff

12:00 - 1:00

Lunch

--

--

1:00 - 2:00

Quality Checking a Recon

demo

Allison Moreau

2:00 - 2:50

Future Directions

talk

Bruce Fischl

2:50 - 3:00

Question & Answer session

--

staff

Answers to online questions here

* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk covering basic/beginner material.

FsTutorial/Sept2016CourseSchedule (last edited 2017-09-26 11:31:11 by MorganFogarty)